Synechococcus phage S-RIP1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Kajamvirus; Synechococcus virus SRIP1

Average proteome isoelectric point is 5.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 55 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M4NNP5|M4NNP5_9CAUD Uncharacterized protein OS=Synechococcus phage S-RIP1 OX=754041 GN=SWVG_00037 PE=4 SV=1
MM1 pKa = 7.52LLAPEE6 pKa = 4.17MTDD9 pKa = 3.25YY10 pKa = 10.95EE11 pKa = 4.6CRR13 pKa = 11.84VSEE16 pKa = 5.53LIGTLKK22 pKa = 9.93PARR25 pKa = 11.84IEE27 pKa = 3.98HH28 pKa = 7.02FINEE32 pKa = 4.13LEE34 pKa = 4.0GWGIDD39 pKa = 4.68SEE41 pKa = 4.44EE42 pKa = 4.14QLDD45 pKa = 3.67DD46 pKa = 4.66AYY48 pKa = 10.88YY49 pKa = 9.67GCYY52 pKa = 9.6PSVEE56 pKa = 4.33SFVEE60 pKa = 4.76DD61 pKa = 3.89LCEE64 pKa = 3.93DD65 pKa = 4.33CYY67 pKa = 11.84ADD69 pKa = 4.66VIRR72 pKa = 11.84SMPTFMQTALDD83 pKa = 4.21YY84 pKa = 11.42EE85 pKa = 4.74LMWHH89 pKa = 6.48QSFQYY94 pKa = 11.06DD95 pKa = 3.81FFTIYY100 pKa = 10.84DD101 pKa = 4.02RR102 pKa = 11.84DD103 pKa = 3.6SGDD106 pKa = 3.24YY107 pKa = 11.24YY108 pKa = 11.11FFNRR112 pKa = 11.84NFF114 pKa = 3.24

Molecular weight: 13.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M4NUZ0|M4NUZ0_9CAUD Uncharacterized protein OS=Synechococcus phage S-RIP1 OX=754041 GN=SWVG_00034 PE=4 SV=1
MM1 pKa = 7.44FIKK4 pKa = 9.66RR5 pKa = 11.84TSAAIHH11 pKa = 6.4CISTDD16 pKa = 3.75FLHH19 pKa = 6.98GVVDD23 pKa = 3.91VMFSNGSVYY32 pKa = 10.24RR33 pKa = 11.84YY34 pKa = 10.21SNVSRR39 pKa = 11.84RR40 pKa = 11.84AIANLQLQRR49 pKa = 11.84NMSLGFWVNNNLLGNKK65 pKa = 8.48RR66 pKa = 11.84VKK68 pKa = 9.42STQTYY73 pKa = 9.23GAIPAIAA80 pKa = 4.3

Molecular weight: 8.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

55

0

55

11195

49

1067

203.5

22.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.397 ± 0.499

1.081 ± 0.239

6.137 ± 0.239

6.521 ± 0.355

3.609 ± 0.203

7.11 ± 0.458

1.626 ± 0.24

5.333 ± 0.232

5.208 ± 0.358

7.941 ± 0.343

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.787 ± 0.27

4.618 ± 0.282

4.484 ± 0.34

4.859 ± 0.318

5.065 ± 0.292

6.646 ± 0.344

6.664 ± 0.596

5.94 ± 0.256

1.242 ± 0.177

3.734 ± 0.23
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski