Arabidopsis halleri partitivirus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; unclassified Partitiviridae

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B4ZBZ5|A0A1B4ZBZ5_9VIRU RNA-dependent RNA polymerase OS=Arabidopsis halleri partitivirus 1 OX=1849335 GN=RdRP PE=4 SV=1
MM1 pKa = 7.43SMKK4 pKa = 10.24RR5 pKa = 11.84KK6 pKa = 9.39SRR8 pKa = 11.84PSSSTKK14 pKa = 10.38DD15 pKa = 3.41LEE17 pKa = 5.09VEE19 pKa = 3.96DD20 pKa = 5.1TYY22 pKa = 11.65LKK24 pKa = 10.72QSGLDD29 pKa = 3.42SMNKK33 pKa = 9.91LEE35 pKa = 4.82PVEE38 pKa = 3.93QSKK41 pKa = 11.44DD42 pKa = 3.37EE43 pKa = 4.21EE44 pKa = 4.54TTKK47 pKa = 10.88VSMLPTASTAIIAPRR62 pKa = 11.84KK63 pKa = 8.23LTAEE67 pKa = 4.39DD68 pKa = 4.62FSSKK72 pKa = 10.24RR73 pKa = 11.84KK74 pKa = 9.19PDD76 pKa = 3.21QTSAVSPFFGFLRR89 pKa = 11.84THH91 pKa = 7.03ILHH94 pKa = 6.42PTQGRR99 pKa = 11.84LSHH102 pKa = 6.45YY103 pKa = 10.22YY104 pKa = 9.41PSCHH108 pKa = 5.63MMDD111 pKa = 4.8YY112 pKa = 10.11ILHH115 pKa = 6.77SINSTLCDD123 pKa = 2.82NYY125 pKa = 10.2YY126 pKa = 10.63FKK128 pKa = 11.15RR129 pKa = 11.84EE130 pKa = 3.91TPNYY134 pKa = 8.87HH135 pKa = 6.8PYY137 pKa = 10.43ILRR140 pKa = 11.84LYY142 pKa = 10.19FGVLFWVQCLRR153 pKa = 11.84AGNDD157 pKa = 3.18VQVINDD163 pKa = 3.34LHH165 pKa = 7.93YY166 pKa = 11.44DD167 pKa = 4.01FLQRR171 pKa = 11.84FLDD174 pKa = 4.13CNPLEE179 pKa = 4.41SLAIPGPLLGLFKK192 pKa = 9.67TLCSSQPEE200 pKa = 4.17FPHH203 pKa = 5.86YY204 pKa = 10.63GKK206 pKa = 10.64VYY208 pKa = 9.91PRR210 pKa = 11.84IPASPGPRR218 pKa = 11.84RR219 pKa = 11.84RR220 pKa = 11.84DD221 pKa = 3.25MFSKK225 pKa = 10.47NVPSAQFLPNVPGIFALIHH244 pKa = 5.98HH245 pKa = 6.77LHH247 pKa = 6.2GLSEE251 pKa = 4.65GEE253 pKa = 3.83HH254 pKa = 6.64PIYY257 pKa = 10.23PKK259 pKa = 10.2RR260 pKa = 11.84KK261 pKa = 7.47RR262 pKa = 11.84HH263 pKa = 5.46IPVTEE268 pKa = 3.76EE269 pKa = 3.43ASNFGFKK276 pKa = 10.56AFAAFPNRR284 pKa = 11.84IQRR287 pKa = 11.84DD288 pKa = 3.17RR289 pKa = 11.84WMVSSPGLQYY299 pKa = 10.71PCEE302 pKa = 4.66ADD304 pKa = 2.91MKK306 pKa = 9.69MNEE309 pKa = 3.76AFAEE313 pKa = 4.02RR314 pKa = 11.84FYY316 pKa = 11.57DD317 pKa = 3.77FDD319 pKa = 4.21FPAFNADD326 pKa = 4.32DD327 pKa = 4.07NLSTITNFLHH337 pKa = 5.97MRR339 pKa = 11.84KK340 pKa = 9.92SMAWFIRR347 pKa = 11.84AKK349 pKa = 10.3EE350 pKa = 4.26VACSAARR357 pKa = 11.84FFSDD361 pKa = 3.16SGTLADD367 pKa = 4.81CSPHH371 pKa = 7.26GLVSNQIIVAITPPPEE387 pKa = 3.72EE388 pKa = 4.13TFADD392 pKa = 3.89PRR394 pKa = 11.84FSADD398 pKa = 3.13PRR400 pKa = 11.84ALYY403 pKa = 9.71PFSFKK408 pKa = 10.86LKK410 pKa = 9.08STAHH414 pKa = 6.25NLPPLAEE421 pKa = 3.95AAAAFSQTHH430 pKa = 5.05IRR432 pKa = 11.84IFPEE436 pKa = 3.82YY437 pKa = 9.33PLAGNFGQKK446 pKa = 8.36TDD448 pKa = 3.4EE449 pKa = 5.36SGPFWDD455 pKa = 4.14IRR457 pKa = 11.84PIGSSPTDD465 pKa = 3.26DD466 pKa = 3.27TSYY469 pKa = 10.27LTIPPMVKK477 pKa = 9.91AALIEE482 pKa = 4.54KK483 pKa = 10.19GSSRR487 pKa = 4.02

Molecular weight: 55.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B4ZBZ5|A0A1B4ZBZ5_9VIRU RNA-dependent RNA polymerase OS=Arabidopsis halleri partitivirus 1 OX=1849335 GN=RdRP PE=4 SV=1
MM1 pKa = 7.56KK2 pKa = 9.43NTVVLEE8 pKa = 4.09PLPSLARR15 pKa = 11.84PIYY18 pKa = 10.49GDD20 pKa = 3.55TDD22 pKa = 3.77PGRR25 pKa = 11.84NPAYY29 pKa = 10.31QSTVDD34 pKa = 3.16HH35 pKa = 6.79ALRR38 pKa = 11.84RR39 pKa = 11.84LLTAEE44 pKa = 3.96EE45 pKa = 4.14FNIVVNGYY53 pKa = 9.44RR54 pKa = 11.84RR55 pKa = 11.84SPWNEE60 pKa = 3.72DD61 pKa = 2.95ALTADD66 pKa = 3.57IEE68 pKa = 4.44KK69 pKa = 10.85LNSDD73 pKa = 3.74YY74 pKa = 11.62HH75 pKa = 6.85HH76 pKa = 6.71VNKK79 pKa = 10.51DD80 pKa = 2.94EE81 pKa = 4.72HH82 pKa = 6.65YY83 pKa = 9.72YY84 pKa = 10.74KK85 pKa = 10.63AIEE88 pKa = 4.11HH89 pKa = 5.6TKK91 pKa = 10.89KK92 pKa = 10.78LFTPKK97 pKa = 10.17EE98 pKa = 3.93KK99 pKa = 10.52LRR101 pKa = 11.84PVHH104 pKa = 6.84FNDD107 pKa = 3.23LRR109 pKa = 11.84HH110 pKa = 5.85YY111 pKa = 8.77PWQLSTSIGAPFATSEE127 pKa = 3.82KK128 pKa = 8.85WKK130 pKa = 10.72DD131 pKa = 3.83YY132 pKa = 11.16INQKK136 pKa = 10.46YY137 pKa = 10.05DD138 pKa = 3.17GKK140 pKa = 11.0LKK142 pKa = 10.99SRR144 pKa = 11.84DD145 pKa = 3.55FKK147 pKa = 11.7DD148 pKa = 3.52LFKK151 pKa = 9.88EE152 pKa = 4.04THH154 pKa = 5.7GVSLEE159 pKa = 3.84PYY161 pKa = 8.96MIDD164 pKa = 3.32RR165 pKa = 11.84RR166 pKa = 11.84LSKK169 pKa = 10.8RR170 pKa = 11.84NFYY173 pKa = 11.49NEE175 pKa = 3.38MFYY178 pKa = 10.66INRR181 pKa = 11.84INIHH185 pKa = 6.42HH186 pKa = 6.94IKK188 pKa = 10.66DD189 pKa = 3.26GWTTNPAGHH198 pKa = 7.47DD199 pKa = 3.22LRR201 pKa = 11.84YY202 pKa = 8.96WHH204 pKa = 6.54TAHH207 pKa = 7.24ARR209 pKa = 11.84QHH211 pKa = 5.72LVEE214 pKa = 6.38AGDD217 pKa = 3.69EE218 pKa = 4.35DD219 pKa = 4.26KK220 pKa = 11.53VRR222 pKa = 11.84LVFGAPSTLLMAEE235 pKa = 5.16LMFIWPIQTSLLARR249 pKa = 11.84GSSSPMLWGYY259 pKa = 7.61EE260 pKa = 4.06TTTGGWSRR268 pKa = 11.84LYY270 pKa = 10.23NWAYY274 pKa = 10.43SALPRR279 pKa = 11.84FGAVATLDD287 pKa = 3.16WSRR290 pKa = 11.84FDD292 pKa = 3.12KK293 pKa = 10.81DD294 pKa = 3.13ARR296 pKa = 11.84HH297 pKa = 5.2TVITDD302 pKa = 2.81IHH304 pKa = 6.94DD305 pKa = 4.97LIMRR309 pKa = 11.84PMFDD313 pKa = 3.84FNSGYY318 pKa = 10.28HH319 pKa = 4.96PTIINPRR326 pKa = 11.84SNPDD330 pKa = 3.29PQRR333 pKa = 11.84LEE335 pKa = 4.85NLWNWMKK342 pKa = 10.84NAILTTPLLLPDD354 pKa = 3.76GTRR357 pKa = 11.84LQFQHH362 pKa = 6.68SGIYY366 pKa = 9.69SGYY369 pKa = 9.65FQTQILDD376 pKa = 3.45SMYY379 pKa = 8.75NCVMIFTVLSRR390 pKa = 11.84MGFDD394 pKa = 3.97LNSVAIKK401 pKa = 10.63VQGDD405 pKa = 3.5DD406 pKa = 3.71SLILLSHH413 pKa = 7.04SYY415 pKa = 9.96TFLQHH420 pKa = 6.93SFLTTFAHH428 pKa = 6.42HH429 pKa = 6.22AAVYY433 pKa = 9.76FGSTLNVKK441 pKa = 10.18KK442 pKa = 10.91SEE444 pKa = 4.25LLPSLEE450 pKa = 4.12DD451 pKa = 3.72AEE453 pKa = 4.33VLRR456 pKa = 11.84YY457 pKa = 9.56RR458 pKa = 11.84NHH460 pKa = 6.97GMMPYY465 pKa = 9.77RR466 pKa = 11.84EE467 pKa = 4.22EE468 pKa = 4.12LQLLAMLRR476 pKa = 11.84HH477 pKa = 6.2PEE479 pKa = 3.89RR480 pKa = 11.84TASLSALMARR490 pKa = 11.84SIGIAYY496 pKa = 8.7ANCGNYY502 pKa = 8.65TRR504 pKa = 11.84VHH506 pKa = 6.83HH507 pKa = 6.31ICEE510 pKa = 5.19DD511 pKa = 2.66IHH513 pKa = 7.94NYY515 pKa = 10.23LKK517 pKa = 11.13GIGVKK522 pKa = 9.77PDD524 pKa = 3.22AFGLPGGLRR533 pKa = 11.84FRR535 pKa = 11.84KK536 pKa = 9.87NYY538 pKa = 9.55LPSYY542 pKa = 9.24EE543 pKa = 4.96EE544 pKa = 3.73IDD546 pKa = 3.32ISHH549 pKa = 7.06FPTWLEE555 pKa = 3.95TVEE558 pKa = 4.88RR559 pKa = 11.84LLDD562 pKa = 3.69PSRR565 pKa = 11.84PLLTNKK571 pKa = 9.32HH572 pKa = 5.29WPTTHH577 pKa = 6.79FFGIPGEE584 pKa = 4.37SS585 pKa = 3.11

Molecular weight: 67.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1072

487

585

536.0

61.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.716 ± 0.645

1.026 ± 0.366

5.69 ± 0.087

4.944 ± 0.009

5.784 ± 0.833

4.944 ± 0.375

4.384 ± 0.531

5.317 ± 0.109

4.851 ± 0.168

9.701 ± 0.883

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.705 ± 0.021

4.478 ± 0.464

7.369 ± 1.111

2.519 ± 0.211

6.063 ± 0.186

7.836 ± 0.834

5.877 ± 0.441

3.731 ± 0.143

1.679 ± 0.509

4.384 ± 0.409
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski