Schwartzia succinivorans DSM 10502

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Negativicutes; Selenomonadales; Selenomonadaceae; Schwartzia; Schwartzia succinivorans

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2426 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5AHP5|A0A1M5AHP5_9FIRM Uncharacterized protein OS=Schwartzia succinivorans DSM 10502 OX=1123243 GN=SAMN02745190_02310 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 10.17KK3 pKa = 9.05WVCGVCGWIYY13 pKa = 10.92DD14 pKa = 3.98EE15 pKa = 5.22SLGDD19 pKa = 3.39SDD21 pKa = 5.33YY22 pKa = 11.77GLEE25 pKa = 4.28PGVAFKK31 pKa = 10.71DD32 pKa = 3.77LPDD35 pKa = 5.04DD36 pKa = 4.89FVCPLCGVGKK46 pKa = 10.01DD47 pKa = 3.44QFEE50 pKa = 4.56EE51 pKa = 4.25LNEE54 pKa = 3.98

Molecular weight: 6.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M4YHK7|A0A1M4YHK7_9FIRM Cell division protein FtsA OS=Schwartzia succinivorans DSM 10502 OX=1123243 GN=SAMN02745190_01755 PE=4 SV=1
MM1 pKa = 7.12KK2 pKa = 9.28QTYY5 pKa = 9.13QPNKK9 pKa = 7.51HH10 pKa = 4.84WRR12 pKa = 11.84KK13 pKa = 7.07VTHH16 pKa = 6.31GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 8.85TKK25 pKa = 10.37GGRR28 pKa = 11.84LVLKK32 pKa = 10.48ARR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.57GRR39 pKa = 11.84KK40 pKa = 8.67KK41 pKa = 10.63LSAA44 pKa = 3.95

Molecular weight: 5.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2426

0

2426

794237

40

5592

327.4

36.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.86 ± 0.062

1.245 ± 0.023

5.819 ± 0.041

7.372 ± 0.063

4.04 ± 0.039

7.41 ± 0.06

1.934 ± 0.022

6.626 ± 0.04

6.488 ± 0.053

8.989 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.098 ± 0.028

3.93 ± 0.059

3.682 ± 0.038

2.951 ± 0.028

5.007 ± 0.049

5.663 ± 0.049

5.213 ± 0.058

7.216 ± 0.048

0.942 ± 0.017

3.515 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski