Gilliamella apicola SCGC AB-598-I20

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Orbales; Orbaceae; Gilliamella; Gilliamella apicola

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2312 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A080KEC7|A0A080KEC7_9GAMM Amino acid transporter OS=Gilliamella apicola SCGC AB-598-I20 OX=1445514 GN=GASC598I20_007610 PE=4 SV=1
MM1 pKa = 7.84LDD3 pKa = 3.54YY4 pKa = 11.13SVGSSIEE11 pKa = 3.84SDD13 pKa = 3.54SFNAEE18 pKa = 3.93LLYY21 pKa = 11.14DD22 pKa = 3.88GDD24 pKa = 3.93IWGEE28 pKa = 3.97LCLSEE33 pKa = 5.78DD34 pKa = 3.52KK35 pKa = 11.22QNLEE39 pKa = 4.02FVIYY43 pKa = 9.82PSDD46 pKa = 3.66PQRR49 pKa = 11.84VLTFNYY55 pKa = 9.88DD56 pKa = 2.9EE57 pKa = 4.58LMAFIEE63 pKa = 4.23LAKK66 pKa = 10.87NHH68 pKa = 6.72LLQLDD73 pKa = 4.32PLVKK77 pKa = 10.53DD78 pKa = 3.68

Molecular weight: 8.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A080KHM1|A0A080KHM1_9GAMM Protein-export protein SecB OS=Gilliamella apicola SCGC AB-598-I20 OX=1445514 GN=secB PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.68RR12 pKa = 11.84NRR14 pKa = 11.84THH16 pKa = 7.28GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.44GRR39 pKa = 11.84VRR41 pKa = 11.84LTVASS46 pKa = 3.91

Molecular weight: 5.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2312

0

2312

617385

20

2677

267.0

29.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.43 ± 0.051

1.121 ± 0.02

5.36 ± 0.044

5.561 ± 0.055

4.401 ± 0.042

6.241 ± 0.06

2.016 ± 0.026

8.438 ± 0.051

6.538 ± 0.044

10.34 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.407 ± 0.025

5.537 ± 0.05

3.625 ± 0.03

4.595 ± 0.042

3.814 ± 0.04

6.371 ± 0.044

5.285 ± 0.034

6.158 ± 0.042

1.124 ± 0.02

3.637 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski