Salmonella phage Det7

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Ackermannviridae; Cvivirinae; Kuttervirus; Salmonella virus Det7

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 210 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C5PQT4|A0A0C5PQT4_9CAUD Uncharacterized protein OS=Salmonella phage Det7 OX=454798 GN=192 PE=4 SV=1
MM1 pKa = 7.54KK2 pKa = 10.25LKK4 pKa = 10.61KK5 pKa = 10.1DD6 pKa = 3.72VLFHH10 pKa = 7.73KK11 pKa = 10.2IMQVFAVTTMAFSLSACATLLDD33 pKa = 4.79SVDD36 pKa = 3.9LDD38 pKa = 3.99APTFTNQQAVNKK50 pKa = 9.85MEE52 pKa = 4.2DD53 pKa = 3.51TIKK56 pKa = 11.04AHH58 pKa = 6.87AALDD62 pKa = 3.77NTTPGPLQTVCNYY75 pKa = 10.58DD76 pKa = 3.97DD77 pKa = 5.54SIQEE81 pKa = 4.24DD82 pKa = 3.93EE83 pKa = 4.95TYY85 pKa = 10.8HH86 pKa = 5.37CTTYY90 pKa = 10.81VKK92 pKa = 10.2EE93 pKa = 4.33SSVVLYY99 pKa = 10.72ADD101 pKa = 3.77CTEE104 pKa = 4.32EE105 pKa = 3.89QCTATGYY112 pKa = 10.78DD113 pKa = 3.34QVEE116 pKa = 4.46KK117 pKa = 10.86SDD119 pKa = 3.61EE120 pKa = 3.95

Molecular weight: 13.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C5PV19|A0A0C5PV19_9CAUD Uncharacterized protein OS=Salmonella phage Det7 OX=454798 GN=53 PE=4 SV=1
MM1 pKa = 7.04SWKK4 pKa = 10.26LFKK7 pKa = 10.48LRR9 pKa = 11.84KK10 pKa = 8.71ATDD13 pKa = 3.33EE14 pKa = 4.22FLLKK18 pKa = 10.78ARR20 pKa = 11.84MEE22 pKa = 4.14GRR24 pKa = 11.84LVYY27 pKa = 9.82TPYY30 pKa = 10.56PGTTRR35 pKa = 11.84FCSTLRR41 pKa = 11.84KK42 pKa = 8.85QKK44 pKa = 10.47SVSGPRR50 pKa = 11.84RR51 pKa = 11.84LMNQGMLSFNTGDD64 pKa = 4.28HH65 pKa = 6.48RR66 pKa = 11.84PCDD69 pKa = 3.57GGRR72 pKa = 11.84III74 pKa = 5.68

Molecular weight: 8.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

210

0

210

48777

38

1640

232.3

26.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.601 ± 0.142

1.169 ± 0.075

6.314 ± 0.098

6.612 ± 0.2

4.32 ± 0.103

6.733 ± 0.2

1.921 ± 0.113

6.337 ± 0.104

6.466 ± 0.168

8.041 ± 0.132

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.958 ± 0.097

5.24 ± 0.135

3.893 ± 0.108

3.756 ± 0.122

4.961 ± 0.128

6.505 ± 0.185

5.874 ± 0.204

7.014 ± 0.173

1.408 ± 0.072

3.877 ± 0.114
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski