Pseudoxanthobacter soli DSM 19599

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Pseudoxanthobacteraceae; Pseudoxanthobacter; Pseudoxanthobacter soli

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4320 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M7ZNH1|A0A1M7ZNH1_9RHIZ NAD-dependent protein deacylase OS=Pseudoxanthobacter soli DSM 19599 OX=1123029 GN=cobB PE=3 SV=1
MM1 pKa = 7.47SIDD4 pKa = 3.5NGYY7 pKa = 9.84DD8 pKa = 3.11AQIAFISGVDD18 pKa = 3.78GNGLLTPYY26 pKa = 10.73AFSTWQSDD34 pKa = 4.26TIPALYY40 pKa = 10.59YY41 pKa = 9.97PDD43 pKa = 4.21SNEE46 pKa = 4.45TKK48 pKa = 9.72WGAPQPGTPATISYY62 pKa = 10.37SFEE65 pKa = 4.63DD66 pKa = 3.52SSGWTATEE74 pKa = 3.73RR75 pKa = 11.84EE76 pKa = 4.34AFVTAMALWSAVANVAFVEE95 pKa = 4.7APDD98 pKa = 3.8GTADD102 pKa = 3.48FQIRR106 pKa = 11.84RR107 pKa = 11.84GTAGAFWTFDD117 pKa = 3.46SVDD120 pKa = 3.81TLPVGSDD127 pKa = 2.8ILNSPVPGVPYY138 pKa = 10.64LSIATDD144 pKa = 3.34EE145 pKa = 4.77GDD147 pKa = 3.94FGPISTDD154 pKa = 3.37LQVKK158 pKa = 9.75GGYY161 pKa = 8.99PFSTVVHH168 pKa = 6.0EE169 pKa = 4.73LGHH172 pKa = 5.9GLGLGHH178 pKa = 6.97SGPYY182 pKa = 9.58NGNADD187 pKa = 3.88PATQQFGPYY196 pKa = 9.7DD197 pKa = 3.76VNLWSLMSYY206 pKa = 10.35INYY209 pKa = 9.73RR210 pKa = 11.84STNAAYY216 pKa = 9.75YY217 pKa = 10.63GSYY220 pKa = 9.44TVTGTDD226 pKa = 2.64WGQTPDD232 pKa = 3.22GSNRR236 pKa = 11.84DD237 pKa = 3.56LQTPMILDD245 pKa = 3.75IAAVQRR251 pKa = 11.84LYY253 pKa = 10.85GAPVDD258 pKa = 4.58GPLSSGGQVFGFNSNIEE275 pKa = 4.27GPLKK279 pKa = 10.77AIFDD283 pKa = 4.11FSINTTPVLTIWDD296 pKa = 4.11GGTGNVLDD304 pKa = 4.15VSGFTADD311 pKa = 2.93AFIRR315 pKa = 11.84LTPGSFSSVAGLANNIAIAPDD336 pKa = 3.92TVIEE340 pKa = 4.06TAIGGFGNDD349 pKa = 3.46VIIGTEE355 pKa = 4.1LNNVLIGNAGRR366 pKa = 11.84DD367 pKa = 3.49HH368 pKa = 7.17IYY370 pKa = 11.03GVVGSDD376 pKa = 3.84WISGGPGGDD385 pKa = 3.25FIVFGTSEE393 pKa = 4.22NPFGSGGSMLADD405 pKa = 3.71TLADD409 pKa = 3.85LDD411 pKa = 4.19GDD413 pKa = 4.32SVAGLGLHH421 pKa = 5.66NVIGILGAGLARR433 pKa = 11.84ADD435 pKa = 3.15IAVARR440 pKa = 11.84TADD443 pKa = 3.7GAIVSAGGSSFKK455 pKa = 10.64IGGDD459 pKa = 3.36LSGGDD464 pKa = 3.63FMAVARR470 pKa = 11.84QTNGQTHH477 pKa = 5.52TAFSFVDD484 pKa = 3.72YY485 pKa = 10.93LPALAEE491 pKa = 4.38GVSVAPGLINGIANPAFMAGDD512 pKa = 4.02GSVGFSVQIEE522 pKa = 4.58SAVSSYY528 pKa = 11.62SNMLGYY534 pKa = 10.9YY535 pKa = 9.69SVSLNGTISDD545 pKa = 3.52VHH547 pKa = 8.01LLFEE551 pKa = 4.5NTLEE555 pKa = 4.18AAASGEE561 pKa = 4.33TVNLGKK567 pKa = 9.83PGDD570 pKa = 3.88GQQIGFFLVQNGYY583 pKa = 9.9EE584 pKa = 4.33SYY586 pKa = 11.76GDD588 pKa = 4.18LPDD591 pKa = 5.06DD592 pKa = 4.08LSFVSTAGLSTEE604 pKa = 4.82GGSPWVLYY612 pKa = 9.64SQSRR616 pKa = 11.84GFLSDD621 pKa = 2.97AQVFHH626 pKa = 7.28SYY628 pKa = 10.51AAYY631 pKa = 10.63NPDD634 pKa = 2.82GKK636 pKa = 10.64EE637 pKa = 3.78QVLSGTIGGGGYY649 pKa = 10.31LEE651 pKa = 4.88VGFEE655 pKa = 5.05DD656 pKa = 3.63ILRR659 pKa = 11.84DD660 pKa = 3.63TGDD663 pKa = 3.29NDD665 pKa = 3.62YY666 pKa = 10.92QDD668 pKa = 3.63VVIAVRR674 pKa = 11.84EE675 pKa = 4.04SDD677 pKa = 3.87GLFLVV682 pKa = 4.46

Molecular weight: 70.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M7ZMA5|A0A1M7ZMA5_9RHIZ Predicted ATP-dependent endonuclease of the OLD family contains P-loop ATPase and TOPRIM domains OS=Pseudoxanthobacter soli DSM 19599 OX=1123029 GN=SAMN02745172_02433 PE=4 SV=1
MM1 pKa = 7.49KK2 pKa = 9.63AHH4 pKa = 7.03PVMTPPGVMKK14 pKa = 10.71RR15 pKa = 11.84PGATRR20 pKa = 11.84RR21 pKa = 11.84PMARR25 pKa = 11.84NGRR28 pKa = 11.84GTPRR32 pKa = 11.84PGTLWVRR39 pKa = 11.84RR40 pKa = 11.84VGWLVLIWVASVAALGVVALVFRR63 pKa = 11.84AVMSLAGMTPP73 pKa = 3.14

Molecular weight: 7.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4320

0

4320

1486866

39

4325

344.2

36.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.864 ± 0.059

0.735 ± 0.009

5.669 ± 0.034

5.345 ± 0.044

3.632 ± 0.024

9.348 ± 0.086

1.893 ± 0.021

4.975 ± 0.028

2.591 ± 0.029

9.945 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.233 ± 0.017

2.297 ± 0.028

5.442 ± 0.041

2.553 ± 0.02

7.285 ± 0.057

5.356 ± 0.05

5.481 ± 0.065

8.088 ± 0.03

1.227 ± 0.012

2.043 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski