Corynebacterium pyruviciproducens ATCC BAA-1742

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium pyruviciproducens

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2443 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S2ZUQ6|S2ZUQ6_9CORY Sigma-70 family RNA polymerase sigma factor OS=Corynebacterium pyruviciproducens ATCC BAA-1742 OX=1125779 GN=HMPREF1219_02157 PE=3 SV=1
MM1 pKa = 7.32LKK3 pKa = 10.3AWGQQPVTDD12 pKa = 3.92SAGMGTMDD20 pKa = 3.93EE21 pKa = 4.45MGGMDD26 pKa = 4.1HH27 pKa = 7.75GEE29 pKa = 4.04MGGMSGMMSQEE40 pKa = 3.97DD41 pKa = 3.63MTALEE46 pKa = 4.45EE47 pKa = 4.32AQGTQAACLYY57 pKa = 9.23LEE59 pKa = 4.39QMTAHH64 pKa = 6.81HH65 pKa = 6.67EE66 pKa = 4.37GAVDD70 pKa = 3.72MACDD74 pKa = 3.75EE75 pKa = 4.47VADD78 pKa = 4.26GQNRR82 pKa = 11.84HH83 pKa = 6.53AITLAEE89 pKa = 4.09QIINDD94 pKa = 3.7QEE96 pKa = 4.37AEE98 pKa = 4.04IAQMLTDD105 pKa = 4.08LL106 pKa = 4.82

Molecular weight: 11.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S2ZDC9|S2ZDC9_9CORY Uncharacterized protein OS=Corynebacterium pyruviciproducens ATCC BAA-1742 OX=1125779 GN=HMPREF1219_02400 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.63KK15 pKa = 9.39KK16 pKa = 9.04HH17 pKa = 5.39RR18 pKa = 11.84KK19 pKa = 5.37MLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2443

0

2443

781148

23

2666

319.7

34.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.905 ± 0.061

0.844 ± 0.017

6.024 ± 0.042

6.268 ± 0.047

3.414 ± 0.033

8.367 ± 0.044

2.202 ± 0.026

5.131 ± 0.037

3.794 ± 0.041

9.231 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.199 ± 0.023

2.916 ± 0.03

5.182 ± 0.041

3.089 ± 0.024

5.808 ± 0.05

5.89 ± 0.036

6.658 ± 0.052

8.327 ± 0.041

1.346 ± 0.021

2.404 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski