Flavihumibacter solisilvae

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Flavihumibacter

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4215 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C1IH91|A0A0C1IH91_9BACT 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Flavihumibacter solisilvae OX=1349421 GN=metE PE=3 SV=1
MM1 pKa = 7.22VAPTDD6 pKa = 3.4TMGRR10 pKa = 11.84GVFTSEE16 pKa = 4.63SIPANTLVEE25 pKa = 4.23ISPVIVLSDD34 pKa = 3.95GDD36 pKa = 4.43RR37 pKa = 11.84KK38 pKa = 10.73LLDD41 pKa = 3.14QTKK44 pKa = 8.64LHH46 pKa = 7.17DD47 pKa = 5.28YY48 pKa = 9.92IFEE51 pKa = 4.28WGEE54 pKa = 3.93DD55 pKa = 3.72LQDD58 pKa = 3.18CCMALGYY65 pKa = 10.2IPLYY69 pKa = 8.51NHH71 pKa = 6.92SYY73 pKa = 10.91SSNCEE78 pKa = 3.62YY79 pKa = 11.14EE80 pKa = 4.08MDD82 pKa = 4.21FDD84 pKa = 3.75AHH86 pKa = 6.83LISVKK91 pKa = 7.45TVRR94 pKa = 11.84DD95 pKa = 3.45IEE97 pKa = 4.5AGEE100 pKa = 4.05EE101 pKa = 4.06LFINYY106 pKa = 9.94NGDD109 pKa = 3.28WDD111 pKa = 4.16NNAPLWFDD119 pKa = 3.51ALL121 pKa = 3.86

Molecular weight: 13.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C1L8J3|A0A0C1L8J3_9BACT Uncharacterized protein OS=Flavihumibacter solisilvae OX=1349421 GN=OI18_01725 PE=4 SV=1
MM1 pKa = 7.85SIPPSPFRR9 pKa = 11.84DD10 pKa = 3.38LQKK13 pKa = 10.6LYY15 pKa = 10.85RR16 pKa = 11.84IFLYY20 pKa = 10.22SHH22 pKa = 7.02IGSVIISVLIVSLSLMKK39 pKa = 10.45PFAAVTLDD47 pKa = 3.54RR48 pKa = 11.84LLQVIAVLYY57 pKa = 10.4SFLAVIVGLQLFRR70 pKa = 11.84RR71 pKa = 11.84RR72 pKa = 11.84VNAIRR77 pKa = 11.84EE78 pKa = 4.3NNQSVRR84 pKa = 11.84DD85 pKa = 3.7KK86 pKa = 10.92LAQFRR91 pKa = 11.84SGCIVQWALLTGAGFFCSISYY112 pKa = 10.39VITGNWAFPLLAIMLMAIFGGLNPFRR138 pKa = 11.84QKK140 pKa = 11.13VMLQLRR146 pKa = 11.84LSEE149 pKa = 3.98QDD151 pKa = 3.4VAGMM155 pKa = 4.24

Molecular weight: 17.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4215

0

4215

1510737

34

2895

358.4

40.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.717 ± 0.038

0.834 ± 0.011

5.261 ± 0.026

5.794 ± 0.036

4.847 ± 0.028

7.233 ± 0.032

1.961 ± 0.019

6.673 ± 0.031

6.066 ± 0.028

9.454 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.452 ± 0.019

5.108 ± 0.032

4.141 ± 0.022

3.74 ± 0.024

4.784 ± 0.023

6.44 ± 0.03

5.621 ± 0.033

6.613 ± 0.027

1.377 ± 0.016

3.884 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski