Sedimenticola thiotaurini

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Gammaproteobacteria incertae sedis; Sedimenticola

Average proteome isoelectric point is 6.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3407 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F7JZW3|A0A0F7JZW3_9GAMM ATP-binding protein OS=Sedimenticola thiotaurini OX=1543721 GN=AAY24_06950 PE=3 SV=1
MM1 pKa = 7.62KK2 pKa = 10.43KK3 pKa = 9.88HH4 pKa = 6.08FLNAAIISLLTANSVQADD22 pKa = 3.75NLADD26 pKa = 3.61AFSNGTVSGDD36 pKa = 3.14LNLYY40 pKa = 8.88YY41 pKa = 10.83KK42 pKa = 10.86NIDD45 pKa = 3.43SRR47 pKa = 11.84VGADD51 pKa = 3.02AGYY54 pKa = 8.24STGNLGLKK62 pKa = 10.43YY63 pKa = 8.95EE64 pKa = 4.19TAPLNGLQLGLAFRR78 pKa = 11.84HH79 pKa = 5.69GSEE82 pKa = 4.11VDD84 pKa = 3.04EE85 pKa = 5.35DD86 pKa = 4.12NPGDD90 pKa = 3.65SDD92 pKa = 3.83EE93 pKa = 4.96GVGSLLTEE101 pKa = 4.86AYY103 pKa = 9.38ISYY106 pKa = 10.45QGDD109 pKa = 3.39GFGAVLGRR117 pKa = 11.84QAIDD121 pKa = 3.74LEE123 pKa = 4.79WIGDD127 pKa = 3.58YY128 pKa = 11.11HH129 pKa = 6.58EE130 pKa = 5.69AVTLTSDD137 pKa = 4.48LLPATEE143 pKa = 4.14LTVGYY148 pKa = 9.68SRR150 pKa = 11.84SIAVADD156 pKa = 4.15EE157 pKa = 5.33DD158 pKa = 4.83DD159 pKa = 4.41LQHH162 pKa = 6.66SFTDD166 pKa = 3.56IGDD169 pKa = 4.04DD170 pKa = 4.04GAWFLDD176 pKa = 3.64ASINPAEE183 pKa = 4.41GLTLNPYY190 pKa = 9.49YY191 pKa = 10.15IHH193 pKa = 7.19EE194 pKa = 4.89DD195 pKa = 3.55EE196 pKa = 4.88VFDD199 pKa = 4.9GLGLKK204 pKa = 10.17ADD206 pKa = 4.4FEE208 pKa = 4.77HH209 pKa = 7.65ASGLGMTAHH218 pKa = 6.88YY219 pKa = 7.5ATSDD223 pKa = 3.17VDD225 pKa = 3.83VAGEE229 pKa = 3.88SDD231 pKa = 3.73GAILHH236 pKa = 6.31LEE238 pKa = 4.01LRR240 pKa = 11.84GTLGGLALAAGYY252 pKa = 10.14IDD254 pKa = 4.61TDD256 pKa = 3.6DD257 pKa = 3.58QGGVGHH263 pKa = 7.6LDD265 pKa = 3.5DD266 pKa = 5.96LGDD269 pKa = 4.17NISPLEE275 pKa = 4.42EE276 pKa = 4.41GNQVYY281 pKa = 10.33GPDD284 pKa = 3.37AQTWYY289 pKa = 11.01LGGEE293 pKa = 4.1YY294 pKa = 10.25SIGRR298 pKa = 11.84ATIGALVGNTDD309 pKa = 3.35YY310 pKa = 11.55AGNSEE315 pKa = 4.13EE316 pKa = 4.7QEE318 pKa = 3.85INLILGYY325 pKa = 10.65DD326 pKa = 4.27LAAVAEE332 pKa = 4.27NLSVSLVYY340 pKa = 10.89ADD342 pKa = 4.09IDD344 pKa = 3.89AEE346 pKa = 4.33AGNDD350 pKa = 3.73DD351 pKa = 4.2YY352 pKa = 12.08EE353 pKa = 5.17KK354 pKa = 10.14LTLMLSYY361 pKa = 11.17GFF363 pKa = 4.49

Molecular weight: 38.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F7K1A9|A0A0F7K1A9_9GAMM Rod shape-determining protein MreD OS=Sedimenticola thiotaurini OX=1543721 GN=AAY24_14300 PE=3 SV=1
MM1 pKa = 7.4AVKK4 pKa = 10.25KK5 pKa = 10.6ASKK8 pKa = 10.27KK9 pKa = 9.75KK10 pKa = 9.37AAKK13 pKa = 9.67KK14 pKa = 10.11KK15 pKa = 9.84SAAAKK20 pKa = 8.13KK21 pKa = 6.01TTSKK25 pKa = 10.87KK26 pKa = 10.51AVTPKK31 pKa = 10.68KK32 pKa = 10.64SISKK36 pKa = 10.12KK37 pKa = 9.81KK38 pKa = 10.58AVTKK42 pKa = 10.47KK43 pKa = 10.39KK44 pKa = 10.41AVAKK48 pKa = 10.54KK49 pKa = 9.82KK50 pKa = 8.84VAKK53 pKa = 10.49KK54 pKa = 10.31KK55 pKa = 7.5VTKK58 pKa = 10.24KK59 pKa = 10.29KK60 pKa = 10.04SAAKK64 pKa = 10.09KK65 pKa = 9.85KK66 pKa = 9.21VVKK69 pKa = 10.62KK70 pKa = 10.42KK71 pKa = 9.03VAKK74 pKa = 10.19KK75 pKa = 9.9KK76 pKa = 10.01AAAKK80 pKa = 10.15KK81 pKa = 10.02KK82 pKa = 8.84VVKK85 pKa = 10.61KK86 pKa = 10.42KK87 pKa = 9.79VSKK90 pKa = 10.73KK91 pKa = 8.64KK92 pKa = 8.1TAAKK96 pKa = 10.28KK97 pKa = 10.37KK98 pKa = 7.15VTKK101 pKa = 10.41KK102 pKa = 10.25KK103 pKa = 10.19AAPKK107 pKa = 10.18QKK109 pKa = 9.62IAKK112 pKa = 9.72KK113 pKa = 9.97SASKK117 pKa = 10.64KK118 pKa = 9.75KK119 pKa = 9.06ATAKK123 pKa = 10.64KK124 pKa = 10.26KK125 pKa = 7.52VTKK128 pKa = 10.18KK129 pKa = 10.21KK130 pKa = 10.07AALRR134 pKa = 11.84PRR136 pKa = 11.84KK137 pKa = 9.57VRR139 pKa = 11.84PRR141 pKa = 11.84KK142 pKa = 9.7KK143 pKa = 9.93ATTKK147 pKa = 10.43RR148 pKa = 3.49

Molecular weight: 16.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3407

0

3407

1070962

51

1955

314.3

34.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.575 ± 0.045

1.033 ± 0.015

5.558 ± 0.031

6.408 ± 0.041

3.643 ± 0.026

7.772 ± 0.043

2.222 ± 0.02

5.749 ± 0.03

3.754 ± 0.04

11.196 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.612 ± 0.021

3.15 ± 0.025

4.755 ± 0.029

4.468 ± 0.036

6.534 ± 0.04

5.734 ± 0.028

4.95 ± 0.021

6.948 ± 0.038

1.252 ± 0.017

2.688 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski