Maribacter vaceletii

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3317 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A495E6A9|A0A495E6A9_9FLAO Uncharacterized protein OS=Maribacter vaceletii OX=1206816 GN=CLV91_2581 PE=4 SV=1
MM1 pKa = 7.61KK2 pKa = 10.44KK3 pKa = 8.44ITNTKK8 pKa = 7.68YY9 pKa = 10.41VKK11 pKa = 10.68NIFASALMLVATTSTFAQDD30 pKa = 2.98EE31 pKa = 4.39EE32 pKa = 4.46AAEE35 pKa = 4.08EE36 pKa = 4.15APKK39 pKa = 11.0LEE41 pKa = 4.03ISGSVDD47 pKa = 2.63AYY49 pKa = 11.2YY50 pKa = 9.01RR51 pKa = 11.84TAFNDD56 pKa = 3.24AGVASTDD63 pKa = 3.38PGTAFANQTGFALGMGNLIASYY85 pKa = 10.91DD86 pKa = 3.64AGKK89 pKa = 10.66VGAVLDD95 pKa = 3.89IVVGPRR101 pKa = 11.84GAGATFNTDD110 pKa = 2.52IVDD113 pKa = 4.88GIVNQAYY120 pKa = 9.75VYY122 pKa = 10.42WNVSDD127 pKa = 3.83KK128 pKa = 8.92TTLTMGRR135 pKa = 11.84FNTFLGYY142 pKa = 10.2EE143 pKa = 4.37VIAPQANFNYY153 pKa = 8.18STSYY157 pKa = 10.84LFSNGPFSHH166 pKa = 6.72MGLKK170 pKa = 10.22ADD172 pKa = 4.86FALSDD177 pKa = 4.42DD178 pKa = 3.89FSLMVGVMNPWDD190 pKa = 3.78TNDD193 pKa = 2.92ISGTGEE199 pKa = 3.95YY200 pKa = 10.75SFGAQLGFYY209 pKa = 9.73GQYY212 pKa = 11.08LNFYY216 pKa = 9.24YY217 pKa = 10.59DD218 pKa = 3.09SGKK221 pKa = 10.5NGGLGTEE228 pKa = 3.96IDD230 pKa = 3.8FTGGFDD236 pKa = 3.32ISDD239 pKa = 3.55AFFLGINAAYY249 pKa = 7.5DD250 pKa = 3.68TNDD253 pKa = 3.38AADD256 pKa = 3.32TGFYY260 pKa = 10.66GVALYY265 pKa = 8.64PQIATSDD272 pKa = 3.37AFSIGLRR279 pKa = 11.84GEE281 pKa = 4.39YY282 pKa = 9.46FASTIDD288 pKa = 4.14GGDD291 pKa = 3.41NYY293 pKa = 11.51DD294 pKa = 4.3DD295 pKa = 3.58VTAITLTGSYY305 pKa = 10.59SVDD308 pKa = 3.1NLILKK313 pKa = 10.13PEE315 pKa = 3.99FRR317 pKa = 11.84LDD319 pKa = 3.75SIKK322 pKa = 11.17DD323 pKa = 3.48GFTDD327 pKa = 3.34SDD329 pKa = 3.94GAASDD334 pKa = 3.84SLATFALAAIYY345 pKa = 10.58SFF347 pKa = 4.19

Molecular weight: 36.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A495EC27|A0A495EC27_9FLAO Thioredoxin OS=Maribacter vaceletii OX=1206816 GN=CLV91_0510 PE=3 SV=1
MM1 pKa = 7.54SVRR4 pKa = 11.84KK5 pKa = 9.68LKK7 pKa = 10.5PITPGQRR14 pKa = 11.84FRR16 pKa = 11.84VVNGFDD22 pKa = 5.32AITADD27 pKa = 3.83KK28 pKa = 10.62PEE30 pKa = 4.36KK31 pKa = 10.61SLLAPLKK38 pKa = 10.66KK39 pKa = 10.41SGGRR43 pKa = 11.84NSQGKK48 pKa = 5.87MTMRR52 pKa = 11.84HH53 pKa = 5.73RR54 pKa = 11.84GGGHH58 pKa = 5.08KK59 pKa = 9.74RR60 pKa = 11.84RR61 pKa = 11.84YY62 pKa = 9.28RR63 pKa = 11.84VIDD66 pKa = 4.1FKK68 pKa = 11.12RR69 pKa = 11.84DD70 pKa = 3.57KK71 pKa = 10.71QDD73 pKa = 2.61VAATVKK79 pKa = 10.68SIEE82 pKa = 4.02YY83 pKa = 10.15DD84 pKa = 3.43PNRR87 pKa = 11.84TAFIALLEE95 pKa = 4.26YY96 pKa = 10.99ADD98 pKa = 4.12GVKK101 pKa = 10.19KK102 pKa = 10.6YY103 pKa = 10.48IIAQNGLQVGQKK115 pKa = 9.74VSSGQGAAPEE125 pKa = 4.24VGNALALSEE134 pKa = 4.55IPLGTVISCIEE145 pKa = 3.9LRR147 pKa = 11.84PGQGAVMARR156 pKa = 11.84SAGTFAQLMAKK167 pKa = 9.93DD168 pKa = 4.08GKK170 pKa = 10.42FVTVKK175 pKa = 9.72MPSGEE180 pKa = 4.06TRR182 pKa = 11.84LILSGCMATIGAISNSDD199 pKa = 3.23HH200 pKa = 6.21QLLVSGKK207 pKa = 9.87AGRR210 pKa = 11.84TRR212 pKa = 11.84WLGKK216 pKa = 9.9RR217 pKa = 11.84PRR219 pKa = 11.84TRR221 pKa = 11.84PVAMNPVDD229 pKa = 3.63HH230 pKa = 7.13PMGGGEE236 pKa = 3.89GRR238 pKa = 11.84ASGGHH243 pKa = 5.13PRR245 pKa = 11.84SRR247 pKa = 11.84NGIPAKK253 pKa = 10.36GFRR256 pKa = 11.84TRR258 pKa = 11.84SEE260 pKa = 4.05TKK262 pKa = 9.05STNKK266 pKa = 10.46YY267 pKa = 9.26IIEE270 pKa = 4.03RR271 pKa = 11.84RR272 pKa = 11.84KK273 pKa = 10.1KK274 pKa = 9.82

Molecular weight: 29.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3317

0

3317

1184146

30

4889

357.0

40.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.251 ± 0.042

0.741 ± 0.015

5.394 ± 0.041

6.682 ± 0.046

5.082 ± 0.032

6.567 ± 0.044

1.718 ± 0.018

8.027 ± 0.042

8.329 ± 0.067

9.111 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.096 ± 0.023

6.464 ± 0.045

3.418 ± 0.024

3.028 ± 0.021

3.144 ± 0.029

6.527 ± 0.031

6.01 ± 0.057

6.196 ± 0.031

1.134 ± 0.017

4.083 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski