Corynebacterium phage P1201

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chunghsingvirus; Corynebacterium virus P1201

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 95 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A7IYG4|A7IYG4_9CAUD Gp97 OS=Corynebacterium phage P1201 OX=384848 PE=4 SV=1
MM1 pKa = 7.51SIFHH5 pKa = 6.25TVHH8 pKa = 7.08DD9 pKa = 4.56SSLTTIEE16 pKa = 4.41CTTGEE21 pKa = 4.25IVRR24 pKa = 11.84VGYY27 pKa = 10.69DD28 pKa = 3.64EE29 pKa = 5.23MPEE32 pKa = 4.56CPLDD36 pKa = 3.31WDD38 pKa = 3.94VFGASACRR46 pKa = 11.84RR47 pKa = 11.84VDD49 pKa = 3.17RR50 pKa = 11.84HH51 pKa = 6.45HH52 pKa = 7.63DD53 pKa = 3.56SDD55 pKa = 4.88FLGDD59 pKa = 4.4DD60 pKa = 4.08DD61 pKa = 4.91TVTAYY66 pKa = 10.29RR67 pKa = 11.84DD68 pKa = 3.43HH69 pKa = 7.07LADD72 pKa = 3.41IDD74 pKa = 3.59EE75 pKa = 4.62WEE77 pKa = 4.41NEE79 pKa = 3.94VSEE82 pKa = 4.48LANEE86 pKa = 4.16KK87 pKa = 10.75ADD89 pKa = 4.08DD90 pKa = 4.0EE91 pKa = 4.66GVDD94 pKa = 4.08VFDD97 pKa = 5.68SNWNHH102 pKa = 5.47TPEE105 pKa = 5.53YY106 pKa = 9.34MDD108 pKa = 2.99IWQDD112 pKa = 3.31VVLHH116 pKa = 5.32YY117 pKa = 10.73RR118 pKa = 11.84PMPEE122 pKa = 3.87CPVIVRR128 pKa = 11.84RR129 pKa = 11.84SGEE132 pKa = 3.89CEE134 pKa = 3.82AIVNKK139 pKa = 9.1VQPDD143 pKa = 3.62FMRR146 pKa = 11.84GVVLADD152 pKa = 3.87LAHH155 pKa = 6.97DD156 pKa = 3.61VLEE159 pKa = 4.79TFEE162 pKa = 3.88QWADD166 pKa = 3.39GEE168 pKa = 4.75VYY170 pKa = 9.81MIEE173 pKa = 4.13VEE175 pKa = 4.42HH176 pKa = 6.94PNGDD180 pKa = 3.27TDD182 pKa = 4.38VIGGIYY188 pKa = 10.39GDD190 pKa = 4.21MPTTEE195 pKa = 4.79QDD197 pKa = 3.54VQDD200 pKa = 4.05YY201 pKa = 10.78LL202 pKa = 3.85

Molecular weight: 23.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A7IY83|A7IY83_9CAUD Gp12 OS=Corynebacterium phage P1201 OX=384848 PE=4 SV=1
MM1 pKa = 7.59CLAGVLSYY9 pKa = 10.37PEE11 pKa = 4.2SMRR14 pKa = 11.84GSASSTLRR22 pKa = 11.84IFKK25 pKa = 10.43RR26 pKa = 11.84SVWPSKK32 pKa = 10.4RR33 pKa = 11.84SRR35 pKa = 11.84CPFDD39 pKa = 2.93ISRR42 pKa = 11.84PKK44 pKa = 10.39RR45 pKa = 11.84RR46 pKa = 11.84FRR48 pKa = 11.84PSTGILEE55 pKa = 4.44GDD57 pKa = 4.03LGHH60 pKa = 7.51LSLDD64 pKa = 3.79RR65 pKa = 11.84QPSFAEE71 pKa = 3.82VGFYY75 pKa = 10.48SSKK78 pKa = 10.71RR79 pKa = 11.84PADD82 pKa = 3.27

Molecular weight: 9.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

95

0

95

21088

39

2127

222.0

24.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.502 ± 0.338

0.901 ± 0.142

6.217 ± 0.207

7.905 ± 0.3

3.874 ± 0.231

7.431 ± 0.412

1.683 ± 0.14

5.695 ± 0.16

5.828 ± 0.242

7.952 ± 0.21

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.442 ± 0.176

3.865 ± 0.163

4.472 ± 0.242

3.286 ± 0.167

5.856 ± 0.238

7.341 ± 0.249

5.539 ± 0.237

6.497 ± 0.199

1.674 ± 0.099

3.04 ± 0.245
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski