Marinosulfonomonas sp. PRT-SC04

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Marinosulfonomonas; unclassified Marinosulfonomonas

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1568 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0P8YAU7|A0A0P8YAU7_9RHOB Uncharacterized protein OS=Marinosulfonomonas sp. PRT-SC04 OX=1527300 GN=JI58_05810 PE=4 SV=1
MM1 pKa = 7.39TATTDD6 pKa = 3.62APQGTPDD13 pKa = 4.09APLEE17 pKa = 4.11GTPLIKK23 pKa = 10.44PSTTDD28 pKa = 2.9HH29 pKa = 6.76ALYY32 pKa = 10.02EE33 pKa = 4.43AVVEE37 pKa = 4.51ACRR40 pKa = 11.84SVYY43 pKa = 10.64DD44 pKa = 3.65PEE46 pKa = 4.56VPVNIYY52 pKa = 10.75DD53 pKa = 3.78LGLIYY58 pKa = 10.34TIDD61 pKa = 3.47ISDD64 pKa = 3.75EE65 pKa = 4.29SDD67 pKa = 3.45VLVLMSLTAPGCPVAGEE84 pKa = 4.15MPGWVADD91 pKa = 5.0AISPLPGVKK100 pKa = 9.11TVDD103 pKa = 3.31VQLIWEE109 pKa = 4.55PQWGMEE115 pKa = 4.05MMSDD119 pKa = 3.74EE120 pKa = 4.65ARR122 pKa = 11.84LEE124 pKa = 4.14LGFMM128 pKa = 4.54

Molecular weight: 13.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0P9ADT9|A0A0P9ADT9_9RHOB Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Marinosulfonomonas sp. PRT-SC04 OX=1527300 GN=JI58_01090 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.44GFRR19 pKa = 11.84ARR21 pKa = 11.84MSTKK25 pKa = 10.19AGRR28 pKa = 11.84NILNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.35GRR39 pKa = 11.84AKK41 pKa = 10.69LSAA44 pKa = 3.92

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1568

0

1568

413677

36

1233

263.8

28.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.377 ± 0.08

0.951 ± 0.021

5.941 ± 0.054

5.708 ± 0.065

3.835 ± 0.044

8.305 ± 0.059

2.076 ± 0.029

6.032 ± 0.048

4.479 ± 0.046

9.58 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.09 ± 0.034

3.174 ± 0.03

4.531 ± 0.04

3.245 ± 0.03

5.839 ± 0.05

5.379 ± 0.042

5.579 ± 0.047

7.154 ± 0.051

1.313 ± 0.027

2.413 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski