Acinetobacter phage AbTZA1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Twarogvirinae; Hadassahvirus; Acinetobacter virus AbTZA1

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 253 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3Q9R7C6|A0A3Q9R7C6_9CAUD Uncharacterized protein OS=Acinetobacter phage AbTZA1 OX=2500827 PE=4 SV=1
MM1 pKa = 7.13FAAIHH6 pKa = 6.22LVTEE10 pKa = 4.54SSDD13 pKa = 3.09HH14 pKa = 5.5YY15 pKa = 11.24NYY17 pKa = 10.41LIEE20 pKa = 4.27YY21 pKa = 6.47TTVEE25 pKa = 4.21DD26 pKa = 5.23VINEE30 pKa = 4.03LKK32 pKa = 11.11GLDD35 pKa = 3.72TEE37 pKa = 4.83LGCVSDD43 pKa = 4.97YY44 pKa = 11.49YY45 pKa = 11.48VDD47 pKa = 3.78CQEE50 pKa = 4.46SFKK53 pKa = 11.22DD54 pKa = 3.59DD55 pKa = 3.21EE56 pKa = 4.58RR57 pKa = 11.84KK58 pKa = 9.69IEE60 pKa = 4.04EE61 pKa = 4.6LLRR64 pKa = 11.84DD65 pKa = 4.43AIDD68 pKa = 3.63SQSAANEE75 pKa = 3.63AAYY78 pKa = 10.54FEE80 pKa = 5.49AYY82 pKa = 9.98AA83 pKa = 4.63

Molecular weight: 9.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3Q9R781|A0A3Q9R781_9CAUD Uncharacterized protein OS=Acinetobacter phage AbTZA1 OX=2500827 PE=4 SV=1
MM1 pKa = 7.78IGIVILLIVLLGALFRR17 pKa = 11.84RR18 pKa = 11.84NRR20 pKa = 11.84QQARR24 pKa = 11.84AISKK28 pKa = 9.87LKK30 pKa = 10.75YY31 pKa = 10.26DD32 pKa = 3.84VFCGKK37 pKa = 10.42LKK39 pKa = 10.46FYY41 pKa = 10.45RR42 pKa = 11.84AKK44 pKa = 11.03NEE46 pKa = 3.73LNRR49 pKa = 11.84IKK51 pKa = 10.94NPLPDD56 pKa = 3.85LSSLKK61 pKa = 10.38KK62 pKa = 10.75LEE64 pKa = 4.73FIGFDD69 pKa = 3.49KK70 pKa = 10.87IALNFFNRR78 pKa = 3.61

Molecular weight: 9.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

253

0

253

52344

38

1380

206.9

23.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.088 ± 0.174

1.07 ± 0.066

6.184 ± 0.125

6.73 ± 0.189

4.516 ± 0.103

5.796 ± 0.176

1.928 ± 0.083

7.506 ± 0.137

7.151 ± 0.157

7.917 ± 0.146

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.552 ± 0.079

5.716 ± 0.116

3.605 ± 0.107

3.452 ± 0.086

4.234 ± 0.092

6.4 ± 0.136

6.197 ± 0.25

6.604 ± 0.117

1.305 ± 0.056

4.048 ± 0.126
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski