Facklamia tabacinasalis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae;

Average proteome isoelectric point is 5.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2319 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5R9DV39|A0A5R9DV39_9LACT Alanine racemase OS=Facklamia tabacinasalis OX=87458 GN=alr PE=3 SV=1
MM1 pKa = 7.57KK2 pKa = 10.44KK3 pKa = 9.93HH4 pKa = 6.21IKK6 pKa = 10.29LLLFSLSLFLLFVPQTRR23 pKa = 11.84PKK25 pKa = 11.03AEE27 pKa = 3.74VSLDD31 pKa = 3.55EE32 pKa = 4.53FVGEE36 pKa = 4.34TVTIGTVGEE45 pKa = 4.06EE46 pKa = 4.58LADD49 pKa = 2.98IWEE52 pKa = 4.57FVADD56 pKa = 4.24KK57 pKa = 10.65AAEE60 pKa = 4.26DD61 pKa = 4.74GIEE64 pKa = 3.92LDD66 pKa = 3.47IVLFTDD72 pKa = 3.63YY73 pKa = 8.46NTPNISLVDD82 pKa = 3.9GSLDD86 pKa = 3.32MNAYY90 pKa = 9.27QHH92 pKa = 6.68TDD94 pKa = 4.01FLNDD98 pKa = 3.12WNDD101 pKa = 3.42ANEE104 pKa = 4.21TNLVSIGNTFATPLRR119 pKa = 11.84FFSEE123 pKa = 4.1KK124 pKa = 10.39HH125 pKa = 5.52NSIDD129 pKa = 4.41DD130 pKa = 4.04LPEE133 pKa = 3.85GAIIAIPNDD142 pKa = 3.7LASSSYY148 pKa = 11.2ALQILDD154 pKa = 3.65YY155 pKa = 11.09ADD157 pKa = 4.04LVKK160 pKa = 10.6LDD162 pKa = 4.17EE163 pKa = 5.72SIDD166 pKa = 3.75ALPTVNDD173 pKa = 3.15IVEE176 pKa = 4.27NPNNYY181 pKa = 10.06EE182 pKa = 4.07IIEE185 pKa = 4.27LEE187 pKa = 4.0AAQIPSAMADD197 pKa = 2.72VDD199 pKa = 3.66MGVIHH204 pKa = 6.26QVYY207 pKa = 10.25LEE209 pKa = 4.23STDD212 pKa = 4.84FEE214 pKa = 5.15PNDD217 pKa = 4.13AIYY220 pKa = 10.39SYY222 pKa = 11.14GHH224 pKa = 5.05NTEE227 pKa = 3.94TFNYY231 pKa = 9.7NRR233 pKa = 11.84LNTITVRR240 pKa = 11.84EE241 pKa = 4.03EE242 pKa = 3.95DD243 pKa = 3.31QGNPLYY249 pKa = 10.64QYY251 pKa = 10.74IVDD254 pKa = 5.32LYY256 pKa = 11.2QSDD259 pKa = 4.58DD260 pKa = 3.42VADD263 pKa = 4.25YY264 pKa = 11.0IEE266 pKa = 5.03EE267 pKa = 4.1ISNGGHH273 pKa = 5.05IPAWILLEE281 pKa = 4.23EE282 pKa = 4.54YY283 pKa = 9.16EE284 pKa = 4.75ASLEE288 pKa = 4.08NEE290 pKa = 4.3RR291 pKa = 11.84NN292 pKa = 3.44

Molecular weight: 32.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5R9EN85|A0A5R9EN85_9LACT 6-phospho-beta-glucosidase OS=Facklamia tabacinasalis OX=87458 GN=FEZ33_02775 PE=3 SV=1
MM1 pKa = 7.62TKK3 pKa = 9.13RR4 pKa = 11.84TYY6 pKa = 9.74QPKK9 pKa = 8.54KK10 pKa = 7.82RR11 pKa = 11.84KK12 pKa = 9.02RR13 pKa = 11.84SRR15 pKa = 11.84VHH17 pKa = 6.41GFRR20 pKa = 11.84KK21 pKa = 10.02RR22 pKa = 11.84MSTKK26 pKa = 10.14NGRR29 pKa = 11.84NVLKK33 pKa = 10.48RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84LKK38 pKa = 10.51GRR40 pKa = 11.84KK41 pKa = 9.06KK42 pKa = 10.22ISAA45 pKa = 3.72

Molecular weight: 5.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2319

0

2319

704389

29

1668

303.7

34.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.814 ± 0.051

0.412 ± 0.011

6.004 ± 0.046

7.987 ± 0.065

4.377 ± 0.037

6.358 ± 0.044

1.911 ± 0.026

8.087 ± 0.057

5.705 ± 0.051

9.479 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.619 ± 0.023

5.261 ± 0.037

3.346 ± 0.025

4.043 ± 0.038

3.893 ± 0.04

6.253 ± 0.039

5.729 ± 0.036

6.947 ± 0.038

0.875 ± 0.017

3.899 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski