Candidatus Magnetobacterium bavaricum

Taxonomy: cellular organisms; Bacteria; Nitrospirae; Nitrospira; Nitrospirales; Nitrospiraceae; Candidatus Magnetobacterium

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6447 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F3GVL4|A0A0F3GVL4_9BACT Uncharacterized protein OS=Candidatus Magnetobacterium bavaricum OX=29290 GN=MBAV_001914 PE=4 SV=1
MM1 pKa = 7.74HH2 pKa = 7.92DD3 pKa = 4.4IISLSLQDD11 pKa = 3.95YY12 pKa = 9.4PDD14 pKa = 3.86VVGDD18 pKa = 4.83DD19 pKa = 3.82YY20 pKa = 10.7WTSTDD25 pKa = 2.99SDD27 pKa = 3.59IYY29 pKa = 9.8DD30 pKa = 3.54TFVIGMSSGFVSSSSRR46 pKa = 11.84TYY48 pKa = 10.59PNSVWPVRR56 pKa = 11.84SGQQ59 pKa = 3.25

Molecular weight: 6.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F3GU45|A0A0F3GU45_9BACT Uncharacterized protein OS=Candidatus Magnetobacterium bavaricum OX=29290 GN=MBAV_003569 PE=4 SV=1
MM1 pKa = 7.73EE2 pKa = 5.5PFSYY6 pKa = 10.3QPRR9 pKa = 11.84HH10 pKa = 6.21CSHH13 pKa = 6.46CRR15 pKa = 11.84CRR17 pKa = 11.84IGGDD21 pKa = 3.13KK22 pKa = 10.77RR23 pKa = 11.84QGSQSARR30 pKa = 11.84TQCAARR36 pKa = 11.84VKK38 pKa = 9.8PKK40 pKa = 9.98PSKK43 pKa = 8.72PQQRR47 pKa = 11.84PTQDD51 pKa = 2.54RR52 pKa = 11.84QGQVVRR58 pKa = 11.84GHH60 pKa = 5.88VFPSKK65 pKa = 10.85APAFAHH71 pKa = 7.14DD72 pKa = 4.24NEE74 pKa = 5.14CGHH77 pKa = 6.71GGHH80 pKa = 6.59CRR82 pKa = 11.84VYY84 pKa = 9.41MHH86 pKa = 7.39DD87 pKa = 3.48RR88 pKa = 11.84TSGKK92 pKa = 9.51VQGTEE97 pKa = 3.75LCHH100 pKa = 5.99YY101 pKa = 8.15PAAAPHH107 pKa = 6.59PMAQGRR113 pKa = 11.84IHH115 pKa = 6.91KK116 pKa = 8.66RR117 pKa = 11.84QPQRR121 pKa = 11.84RR122 pKa = 11.84KK123 pKa = 7.71QQQGRR128 pKa = 11.84EE129 pKa = 4.01LHH131 pKa = 6.3PLGKK135 pKa = 8.57RR136 pKa = 11.84TRR138 pKa = 11.84YY139 pKa = 7.97QRR141 pKa = 11.84RR142 pKa = 11.84RR143 pKa = 11.84YY144 pKa = 9.19DD145 pKa = 3.29RR146 pKa = 11.84KK147 pKa = 10.1HH148 pKa = 5.92PLIHH152 pKa = 7.63HH153 pKa = 6.42EE154 pKa = 4.05EE155 pKa = 4.32QVWNRR160 pKa = 11.84LCVIRR165 pKa = 11.84RR166 pKa = 11.84LLSDD170 pKa = 3.9RR171 pKa = 11.84VQPKK175 pKa = 8.77PRR177 pKa = 11.84KK178 pKa = 9.51RR179 pKa = 11.84PNHH182 pKa = 5.91PANVRR187 pKa = 11.84PKK189 pKa = 9.94GQTITPQHH197 pKa = 6.97PYY199 pKa = 8.43HH200 pKa = 6.84TDD202 pKa = 2.91HH203 pKa = 6.51AQHH206 pKa = 6.16YY207 pKa = 8.48KK208 pKa = 10.42AVHH211 pKa = 5.87NSAKK215 pKa = 10.43DD216 pKa = 3.51VLFSDD221 pKa = 4.28HH222 pKa = 6.92PAVEE226 pKa = 4.62KK227 pKa = 10.68SQSGGHH233 pKa = 5.16QHH235 pKa = 5.98HH236 pKa = 6.3QCGTYY241 pKa = 9.65QEE243 pKa = 4.69PGGIAGVNLEE253 pKa = 4.13HH254 pKa = 7.31LLWCLRR260 pKa = 11.84GQGRR264 pKa = 11.84RR265 pKa = 11.84AA266 pKa = 3.14

Molecular weight: 30.61 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6447

0

6447

1584456

22

2585

245.8

27.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.179 ± 0.036

1.302 ± 0.015

5.931 ± 0.031

5.714 ± 0.043

4.106 ± 0.028

7.058 ± 0.041

1.924 ± 0.017

7.537 ± 0.034

6.315 ± 0.036

9.37 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.725 ± 0.015

4.446 ± 0.029

3.829 ± 0.024

3.084 ± 0.017

5.009 ± 0.036

6.508 ± 0.037

6.038 ± 0.05

7.206 ± 0.03

1.101 ± 0.021

3.616 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski