Streptomyces armeniacus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6639 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345XV89|A0A345XV89_9ACTN Aldo/keto reductase OS=Streptomyces armeniacus OX=83291 GN=DVA86_25835 PE=4 SV=1
MM1 pKa = 7.14TVHH4 pKa = 7.2DD5 pKa = 4.47VAAVLPGIPVLRR17 pKa = 11.84DD18 pKa = 3.39LCRR21 pKa = 11.84SMAMADD27 pKa = 3.33AVLNPDD33 pKa = 3.93DD34 pKa = 3.85EE35 pKa = 5.2PYY37 pKa = 11.28YY38 pKa = 10.84SFNAGWSEE46 pKa = 4.14TEE48 pKa = 4.01EE49 pKa = 4.16LASMRR54 pKa = 11.84TGSGDD59 pKa = 3.12EE60 pKa = 3.83FDD62 pKa = 4.71IVFSSAGAYY71 pKa = 8.96IRR73 pKa = 11.84GFDD76 pKa = 3.99HH77 pKa = 7.51EE78 pKa = 5.31SPLSPYY84 pKa = 10.33HH85 pKa = 6.95RR86 pKa = 11.84DD87 pKa = 3.63DD88 pKa = 5.46VPAPWPGVVDD98 pKa = 3.62TVPAVFRR105 pKa = 11.84GLVSEE110 pKa = 4.53PAFTDD115 pKa = 3.29EE116 pKa = 5.63DD117 pKa = 3.98GTPVVTVCMWRR128 pKa = 11.84QEE130 pKa = 4.44GDD132 pKa = 3.83DD133 pKa = 3.46RR134 pKa = 11.84WQAGQIDD141 pKa = 4.48FPGGHH146 pKa = 7.71PDD148 pKa = 3.58PDD150 pKa = 4.08GSDD153 pKa = 2.77WLFGLLADD161 pKa = 4.47PTPEE165 pKa = 3.82AFQAFAEE172 pKa = 4.8DD173 pKa = 4.5YY174 pKa = 10.89YY175 pKa = 10.41EE176 pKa = 3.98TAVDD180 pKa = 3.8IEE182 pKa = 4.59AVRR185 pKa = 11.84HH186 pKa = 4.88VYY188 pKa = 10.19GLRR191 pKa = 11.84PLDD194 pKa = 3.75HH195 pKa = 6.69SAVAGLNPDD204 pKa = 3.18ASYY207 pKa = 11.81DD208 pKa = 3.85DD209 pKa = 4.53LVAAAEE215 pKa = 4.59AIGYY219 pKa = 8.04PLAA222 pKa = 5.8

Molecular weight: 24.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345XYC7|A0A345XYC7_9ACTN Uncharacterized protein OS=Streptomyces armeniacus OX=83291 GN=DVA86_32825 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AIVANRR35 pKa = 11.84RR36 pKa = 11.84SKK38 pKa = 10.91GRR40 pKa = 11.84SKK42 pKa = 11.16LSAA45 pKa = 3.74

Molecular weight: 5.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6639

0

6639

2263626

18

3830

341.0

36.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.934 ± 0.045

0.803 ± 0.008

6.105 ± 0.022

6.025 ± 0.029

2.634 ± 0.019

9.916 ± 0.03

2.331 ± 0.014

2.786 ± 0.02

1.953 ± 0.025

10.25 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.7 ± 0.012

1.639 ± 0.014

6.266 ± 0.029

2.679 ± 0.018

8.373 ± 0.033

4.966 ± 0.018

5.936 ± 0.023

8.197 ± 0.027

1.464 ± 0.012

2.043 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski