Dethiosulfovibrio peptidovorans DSM 11002

Taxonomy: cellular organisms; Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Dethiosulfovibrio; Dethiosulfovibrio peptidovorans

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2432 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D2Z462|D2Z462_9BACT Dihydroorotase and related cyclic amidohydrolase-like protein OS=Dethiosulfovibrio peptidovorans DSM 11002 OX=469381 GN=Dpep_2301 PE=4 SV=1
MM1 pKa = 7.59SARR4 pKa = 11.84EE5 pKa = 3.8KK6 pKa = 10.14IAYY9 pKa = 9.22IKK11 pKa = 10.83GLLDD15 pKa = 3.96AGTPRR20 pKa = 11.84DD21 pKa = 4.14DD22 pKa = 5.68FEE24 pKa = 4.18MALYY28 pKa = 10.02GAIVEE33 pKa = 4.44ALDD36 pKa = 4.69AVVDD40 pKa = 4.0DD41 pKa = 5.09MDD43 pKa = 4.28RR44 pKa = 11.84QDD46 pKa = 3.63EE47 pKa = 4.54SLVALTEE54 pKa = 3.95EE55 pKa = 5.01LMDD58 pKa = 5.24LSDD61 pKa = 3.87YY62 pKa = 11.3CDD64 pKa = 3.79GLGEE68 pKa = 4.53DD69 pKa = 4.56LDD71 pKa = 5.2AIEE74 pKa = 4.89EE75 pKa = 4.5GWLGEE80 pKa = 4.04RR81 pKa = 11.84VLDD84 pKa = 4.55QEE86 pKa = 4.84DD87 pKa = 3.69VLIAEE92 pKa = 4.53GDD94 pKa = 3.71EE95 pKa = 4.25PEE97 pKa = 5.13GVDD100 pKa = 3.73LYY102 pKa = 11.35RR103 pKa = 11.84PILCPYY109 pKa = 8.66CSTMFYY115 pKa = 10.56YY116 pKa = 10.49RR117 pKa = 11.84PDD119 pKa = 3.52LCDD122 pKa = 3.72EE123 pKa = 4.74NDD125 pKa = 3.55TAQCPNCRR133 pKa = 11.84RR134 pKa = 11.84TFAPSEE140 pKa = 4.22VEE142 pKa = 4.18LEE144 pKa = 4.27EE145 pKa = 4.28EE146 pKa = 4.21

Molecular weight: 16.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D2Z2P3|D2Z2P3_9BACT Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Dethiosulfovibrio peptidovorans DSM 11002 OX=469381 GN=dut PE=3 SV=1
MM1 pKa = 7.26KK2 pKa = 9.53QTFQPHH8 pKa = 4.48NRR10 pKa = 11.84PRR12 pKa = 11.84KK13 pKa = 8.83RR14 pKa = 11.84KK15 pKa = 8.04MGFLARR21 pKa = 11.84SSSPSGRR28 pKa = 11.84RR29 pKa = 11.84ILANRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.82GRR39 pKa = 11.84KK40 pKa = 8.69RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2432

0

2432

782988

30

1943

322.0

35.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.151 ± 0.05

1.206 ± 0.018

6.162 ± 0.041

6.971 ± 0.048

3.785 ± 0.031

8.71 ± 0.042

1.584 ± 0.017

5.824 ± 0.04

4.925 ± 0.039

10.169 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.097 ± 0.021

2.655 ± 0.029

4.399 ± 0.033

2.22 ± 0.023

6.442 ± 0.053

7.138 ± 0.048

4.518 ± 0.035

8.168 ± 0.041

1.286 ± 0.021

2.59 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski