Fervidicola ferrireducens

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Thermosediminibacterales; Thermosediminibacteraceae; Fervidicola

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2421 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A140L6A5|A0A140L6A5_9FIRM Uncharacterized protein OS=Fervidicola ferrireducens OX=520764 GN=AN618_16680 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 10.23KK3 pKa = 9.14WVCTVCGYY11 pKa = 11.14VYY13 pKa = 10.74DD14 pKa = 4.65PDD16 pKa = 5.75KK17 pKa = 11.41GDD19 pKa = 4.02PDD21 pKa = 3.71NGIEE25 pKa = 4.46PGTSFDD31 pKa = 5.6DD32 pKa = 6.0LPDD35 pKa = 4.02DD36 pKa = 3.81WTCPVCGAGKK46 pKa = 10.55DD47 pKa = 3.64MFEE50 pKa = 4.42EE51 pKa = 4.5EE52 pKa = 4.21

Molecular weight: 5.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A140L4E1|A0A140L4E1_9FIRM Orotate phosphoribosyltransferase OS=Fervidicola ferrireducens OX=520764 GN=pyrE PE=3 SV=1
MM1 pKa = 7.07GHH3 pKa = 6.96KK4 pKa = 9.87NLKK7 pKa = 9.57QLDD10 pKa = 4.39AIAFKK15 pKa = 10.69PGDD18 pKa = 3.4EE19 pKa = 4.27SGFRR23 pKa = 11.84LCYY26 pKa = 9.39NGSMKK31 pKa = 9.09HH32 pKa = 4.66TNVVRR37 pKa = 11.84VLPDD41 pKa = 3.1KK42 pKa = 10.6RR43 pKa = 11.84QKK45 pKa = 10.27QVLEE49 pKa = 4.47IIGDD53 pKa = 3.87RR54 pKa = 11.84CAALWNAVQYY64 pKa = 10.49RR65 pKa = 11.84CRR67 pKa = 11.84QAFFKK72 pKa = 10.78GDD74 pKa = 3.82SVPSYY79 pKa = 11.1AALCSEE85 pKa = 4.81FKK87 pKa = 10.5EE88 pKa = 4.38HH89 pKa = 6.94PAYY92 pKa = 9.76KK93 pKa = 10.27ALPAHH98 pKa = 7.2IGQEE102 pKa = 4.36VIKK105 pKa = 10.0KK106 pKa = 9.63ARR108 pKa = 11.84KK109 pKa = 8.86AWDD112 pKa = 3.36SYY114 pKa = 9.23FACLRR119 pKa = 11.84LYY121 pKa = 10.7RR122 pKa = 11.84KK123 pKa = 10.33GEE125 pKa = 4.15LKK127 pKa = 10.46EE128 pKa = 4.15PPHH131 pKa = 7.12IPRR134 pKa = 11.84YY135 pKa = 8.09WKK137 pKa = 10.1DD138 pKa = 2.87RR139 pKa = 11.84RR140 pKa = 11.84TGRR143 pKa = 11.84RR144 pKa = 11.84IFRR147 pKa = 11.84VIPVKK152 pKa = 10.88APTSYY157 pKa = 11.47SLDD160 pKa = 3.52ARR162 pKa = 11.84CLSLTLPQDD171 pKa = 3.42LRR173 pKa = 11.84KK174 pKa = 10.12GQGDD178 pKa = 3.69RR179 pKa = 11.84LVLRR183 pKa = 11.84TKK185 pKa = 10.68GVLRR189 pKa = 11.84FHH191 pKa = 6.96GRR193 pKa = 11.84PKK195 pKa = 10.14TLEE198 pKa = 3.93LKK200 pKa = 10.2YY201 pKa = 11.07DD202 pKa = 3.65PVKK205 pKa = 10.08TRR207 pKa = 11.84WYY209 pKa = 7.9AHH211 pKa = 5.21QVVEE215 pKa = 4.35VPEE218 pKa = 4.41PVRR221 pKa = 11.84KK222 pKa = 9.53ARR224 pKa = 11.84PEE226 pKa = 3.42KK227 pKa = 10.39HH228 pKa = 6.06AAIDD232 pKa = 3.44LGARR236 pKa = 11.84VLVALAVEE244 pKa = 4.52GLNRR248 pKa = 11.84QLLFSARR255 pKa = 11.84EE256 pKa = 3.87VIKK259 pKa = 10.97DD260 pKa = 3.21FLYY263 pKa = 8.04WTNQIAGEE271 pKa = 3.94QSRR274 pKa = 11.84LNRR277 pKa = 11.84AGRR280 pKa = 11.84KK281 pKa = 5.74TSRR284 pKa = 11.84RR285 pKa = 11.84LKK287 pKa = 10.42RR288 pKa = 11.84LYY290 pKa = 9.27QLRR293 pKa = 11.84ARR295 pKa = 11.84RR296 pKa = 11.84LRR298 pKa = 11.84HH299 pKa = 5.83AFVALAAEE307 pKa = 4.62IVRR310 pKa = 11.84ILKK313 pKa = 10.1RR314 pKa = 11.84LRR316 pKa = 11.84VTTLFLEE323 pKa = 4.57DD324 pKa = 3.17LTGIRR329 pKa = 11.84EE330 pKa = 4.28AMDD333 pKa = 3.97FGPKK337 pKa = 9.82NLLVHH342 pKa = 6.29NFWAFRR348 pKa = 11.84MLRR351 pKa = 11.84NLIEE355 pKa = 4.26AACTRR360 pKa = 11.84TGIRR364 pKa = 11.84VVPVEE369 pKa = 4.28PRR371 pKa = 11.84GTSCRR376 pKa = 11.84CAVCGSSVRR385 pKa = 11.84RR386 pKa = 11.84PVRR389 pKa = 11.84HH390 pKa = 5.98KK391 pKa = 10.61AVCEE395 pKa = 3.58KK396 pKa = 10.6CGRR399 pKa = 11.84VWHH402 pKa = 7.0ADD404 pKa = 2.81ANAALNIILQGSSKK418 pKa = 10.18EE419 pKa = 4.16HH420 pKa = 5.99GAEE423 pKa = 3.89ATPLKK428 pKa = 10.28PLALRR433 pKa = 11.84WDD435 pKa = 3.41RR436 pKa = 11.84HH437 pKa = 4.06RR438 pKa = 11.84WVSRR442 pKa = 11.84FEE444 pKa = 4.28SAAGTPSGATSGSRR458 pKa = 11.84MAAA461 pKa = 3.18

Molecular weight: 52.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2421

0

2421

709530

30

2290

293.1

32.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.773 ± 0.059

1.063 ± 0.023

4.862 ± 0.031

8.074 ± 0.066

4.242 ± 0.04

7.569 ± 0.044

1.472 ± 0.02

7.876 ± 0.045

7.745 ± 0.046

9.773 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.629 ± 0.023

3.703 ± 0.028

4.007 ± 0.029

2.376 ± 0.024

5.179 ± 0.044

5.298 ± 0.033

4.471 ± 0.036

7.789 ± 0.047

0.786 ± 0.017

3.316 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski