Bos grunniens papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Deltapapillomavirus; Deltapapillomavirus 4

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J7K4X5|J7K4X5_BPV1 Replication protein E1 OS=Bos grunniens papillomavirus 1 OX=2758380 GN=E1 PE=3 SV=1
MM1 pKa = 7.49PNLWFLLFLGLVAAMQLLLLLFLLLFFLVYY31 pKa = 9.25WDD33 pKa = 4.88HH34 pKa = 6.96FEE36 pKa = 4.44CSCTSLPFF44 pKa = 4.63

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J7K4Y3|J7K4Y3_BPV1 Minor capsid protein L2 OS=Bos grunniens papillomavirus 1 OX=2758380 GN=L2 PE=3 SV=1
MM1 pKa = 7.4LVFHH5 pKa = 7.24PPLLILEE12 pKa = 4.69IAQTGSGSHH21 pKa = 6.35PRR23 pKa = 11.84DD24 pKa = 3.19LKK26 pKa = 9.93EE27 pKa = 3.62THH29 pKa = 5.57QEE31 pKa = 4.03KK32 pKa = 10.6KK33 pKa = 10.09PSQPSLSLLCSAPPPAVPSEE53 pKa = 4.08QASVGYY59 pKa = 10.0GIILARR65 pKa = 11.84TPTIFLQARR74 pKa = 11.84GAVYY78 pKa = 10.4SALPPPRR85 pKa = 11.84CRR87 pKa = 11.84ARR89 pKa = 11.84YY90 pKa = 8.6RR91 pKa = 11.84WTWHH95 pKa = 4.74QGRR98 pKa = 11.84KK99 pKa = 5.95KK100 pKa = 9.03TRR102 pKa = 11.84NNRR105 pKa = 11.84PTPQRR110 pKa = 11.84KK111 pKa = 8.37KK112 pKa = 8.11QQ113 pKa = 3.25

Molecular weight: 12.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2402

44

606

300.3

33.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.369 ± 0.702

2.456 ± 0.886

5.287 ± 0.465

5.995 ± 0.557

4.33 ± 0.523

7.286 ± 0.703

2.664 ± 0.31

4.08 ± 0.696

5.329 ± 0.783

9.7 ± 0.983

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.291 ± 0.272

3.747 ± 0.619

5.912 ± 1.164

4.163 ± 0.387

5.953 ± 0.858

7.785 ± 0.846

6.744 ± 0.436

5.329 ± 0.413

1.499 ± 0.208

3.081 ± 0.384
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski