Roseivivax isoporae LMG 25204

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseivivax; Roseivivax isoporae

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4626 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|X7F3A6|X7F3A6_9RHOB Cation:proton antiporter OS=Roseivivax isoporae LMG 25204 OX=1449351 GN=RISW2_13910 PE=3 SV=1
MM1 pKa = 7.24NRR3 pKa = 11.84TAAIALAAALAAVPAVAQQSGEE25 pKa = 4.27SLSGSLVLYY34 pKa = 8.97TSQPDD39 pKa = 2.99QDD41 pKa = 3.7AQQTVDD47 pKa = 4.3AFNEE51 pKa = 4.34VYY53 pKa = 10.52PDD55 pKa = 3.96IDD57 pKa = 3.98VEE59 pKa = 4.3WVRR62 pKa = 11.84DD63 pKa = 3.58GTTQMMARR71 pKa = 11.84LRR73 pKa = 11.84AEE75 pKa = 4.42FEE77 pKa = 4.19AGQPQPDD84 pKa = 3.71VLLIADD90 pKa = 4.56TVTMEE95 pKa = 4.35SLEE98 pKa = 4.12QEE100 pKa = 4.58GRR102 pKa = 11.84LMAYY106 pKa = 9.06TDD108 pKa = 4.44ADD110 pKa = 3.43VSAYY114 pKa = 10.41DD115 pKa = 4.0EE116 pKa = 4.62GLMDD120 pKa = 3.89PEE122 pKa = 5.21GYY124 pKa = 10.53YY125 pKa = 10.8FSTKK129 pKa = 10.53LITTGIVYY137 pKa = 10.59NEE139 pKa = 4.15AAEE142 pKa = 4.27MVPQSYY148 pKa = 11.59ADD150 pKa = 3.91LLEE153 pKa = 4.38PAAEE157 pKa = 4.21NNIVMPSPLEE167 pKa = 4.14SGAATIHH174 pKa = 5.55MVSLTGLPEE183 pKa = 4.64LGWDD187 pKa = 4.07YY188 pKa = 11.54YY189 pKa = 11.25QGLADD194 pKa = 4.21QGAIAQGGNGGTYY207 pKa = 9.3QAVAGGQALYY217 pKa = 10.97GFVVDD222 pKa = 7.14FLALRR227 pKa = 11.84NIQDD231 pKa = 3.68GAPVGFVFPEE241 pKa = 4.09EE242 pKa = 4.17GVSAVTEE249 pKa = 3.97PVAILEE255 pKa = 4.23TARR258 pKa = 11.84NVEE261 pKa = 3.92AAQAFVDD268 pKa = 4.39FLLSEE273 pKa = 4.89RR274 pKa = 11.84GQEE277 pKa = 3.61LAAAQGYY284 pKa = 9.47LPAHH288 pKa = 7.25PDD290 pKa = 3.08VAAPDD295 pKa = 3.95YY296 pKa = 10.93FPDD299 pKa = 3.7RR300 pKa = 11.84STIKK304 pKa = 10.94VIDD307 pKa = 4.02FDD309 pKa = 4.24PAEE312 pKa = 4.31ALANDD317 pKa = 3.75AAYY320 pKa = 9.76KK321 pKa = 10.42EE322 pKa = 4.48RR323 pKa = 11.84FAEE326 pKa = 4.32TFGGG330 pKa = 3.75

Molecular weight: 35.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|X7F8R9|X7F8R9_9RHOB Uncharacterized protein OS=Roseivivax isoporae LMG 25204 OX=1449351 GN=RISW2_06215 PE=4 SV=1
MM1 pKa = 7.5SIKK4 pKa = 10.86GIVTKK9 pKa = 9.85VAKK12 pKa = 10.32GYY14 pKa = 10.35ARR16 pKa = 11.84SKK18 pKa = 9.8SGHH21 pKa = 5.07GAARR25 pKa = 11.84RR26 pKa = 11.84PVNRR30 pKa = 11.84PVRR33 pKa = 11.84RR34 pKa = 11.84TGGKK38 pKa = 8.26GQLVRR43 pKa = 11.84GLLNFARR50 pKa = 11.84KK51 pKa = 9.19KK52 pKa = 9.12VV53 pKa = 3.34

Molecular weight: 5.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4626

0

4626

1446104

28

5196

312.6

33.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.849 ± 0.063

0.829 ± 0.012

6.347 ± 0.036

5.828 ± 0.034

3.512 ± 0.023

9.253 ± 0.045

1.996 ± 0.019

4.466 ± 0.028

2.037 ± 0.026

10.187 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.548 ± 0.017

2.082 ± 0.021

5.369 ± 0.024

2.693 ± 0.019

7.862 ± 0.043

4.619 ± 0.024

5.437 ± 0.026

7.653 ± 0.03

1.403 ± 0.015

2.029 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski