Rhesus cytomegalovirus (strain 68-1) (RhCMV)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Betaherpesvirinae; Cytomegalovirus; Macacine betaherpesvirus 3

Average proteome isoelectric point is 7.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 223 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q7TFW5|Q7TFW5_RHCM6 Rh16 OS=Rhesus cytomegalovirus (strain 68-1) OX=103930 PE=4 SV=1
MM1 pKa = 7.54FISGVLVQEE10 pKa = 4.42VVVVVYY16 pKa = 10.14EE17 pKa = 4.22LFLDD21 pKa = 3.92TFVDD25 pKa = 3.48SFDD28 pKa = 3.55NVFVYY33 pKa = 10.0DD34 pKa = 3.51VRR36 pKa = 11.84VTSEE40 pKa = 4.03VQDD43 pKa = 3.88AFCDD47 pKa = 3.91VYY49 pKa = 11.63EE50 pKa = 4.16MLVTVLDD57 pKa = 3.37IGVVVFPCEE66 pKa = 4.07VLADD70 pKa = 4.18PYY72 pKa = 11.21VVVHH76 pKa = 6.07VVLLIYY82 pKa = 10.38EE83 pKa = 4.44LFVDD87 pKa = 4.12LGVVEE92 pKa = 4.84SVVNSVVILTLDD104 pKa = 3.39EE105 pKa = 4.87LFVEE109 pKa = 4.87LSVARR114 pKa = 11.84IGQNMTKK121 pKa = 10.61

Molecular weight: 13.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q7TFS9|Q7TFS9_RHCM6 Rh52 OS=Rhesus cytomegalovirus (strain 68-1) OX=103930 PE=4 SV=1
MM1 pKa = 8.27KK2 pKa = 10.46MMMTTMKK9 pKa = 9.62RR10 pKa = 11.84QRR12 pKa = 11.84WMVMRR17 pKa = 11.84AWATPPRR24 pKa = 11.84PMIGLRR30 pKa = 11.84GRR32 pKa = 11.84HH33 pKa = 4.89LLGRR37 pKa = 11.84TSCYY41 pKa = 9.87LYY43 pKa = 10.42KK44 pKa = 10.33IKK46 pKa = 10.56FQITGSFPTCKK57 pKa = 9.65RR58 pKa = 11.84RR59 pKa = 11.84SKK61 pKa = 10.79AVSTAARR68 pKa = 11.84SVQWVYY74 pKa = 9.47FWEE77 pKa = 4.35MRR79 pKa = 11.84VRR81 pKa = 11.84WCLKK85 pKa = 9.41PQLDD89 pKa = 3.66MDD91 pKa = 4.93GIEE94 pKa = 4.65AFCEE98 pKa = 4.82FYY100 pKa = 10.16STLSIRR106 pKa = 11.84DD107 pKa = 3.11QDD109 pKa = 3.77DD110 pKa = 3.59FNRR113 pKa = 11.84EE114 pKa = 3.31VDD116 pKa = 3.51LGVQHH121 pKa = 7.28RR122 pKa = 11.84RR123 pKa = 11.84LQQLRR128 pKa = 11.84RR129 pKa = 11.84ARR131 pKa = 11.84QNLKK135 pKa = 10.39RR136 pKa = 11.84EE137 pKa = 4.62CICSGGG143 pKa = 3.42

Molecular weight: 17.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

223

0

223

66627

100

2177

298.8

33.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.64 ± 0.179

2.675 ± 0.095

4.479 ± 0.137

4.824 ± 0.133

4.171 ± 0.124

4.84 ± 0.12

3.284 ± 0.104

5.094 ± 0.13

3.584 ± 0.136

9.886 ± 0.193

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.534 ± 0.077

4.127 ± 0.119

5.654 ± 0.194

3.904 ± 0.137

7.009 ± 0.202

7.967 ± 0.17

7.213 ± 0.26

7.114 ± 0.158

1.483 ± 0.092

3.518 ± 0.097
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski