Diatraea saccharalis granulovirus

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Betabaculovirus

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 125 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R7EYV4|A0A0R7EYV4_9BBAC Uncharacterized protein OS=Diatraea saccharalis granulovirus OX=1675862 GN=ORF-11 PE=4 SV=1
MM1 pKa = 7.57EE2 pKa = 5.65SDD4 pKa = 4.41EE5 pKa = 5.45SILDD9 pKa = 4.05NILKK13 pKa = 10.86DD14 pKa = 4.03NVRR17 pKa = 11.84LLNNKK22 pKa = 8.55YY23 pKa = 10.76LIFNVVDD30 pKa = 3.47IDD32 pKa = 4.09DD33 pKa = 4.21EE34 pKa = 4.68LRR36 pKa = 11.84TSCYY40 pKa = 10.64GILNLPTDD48 pKa = 4.04TNQQEE53 pKa = 4.59TLSSSSQSGEE63 pKa = 4.12LYY65 pKa = 10.71SDD67 pKa = 3.63TNEE70 pKa = 3.99GTNKK74 pKa = 9.99NNQQ77 pKa = 3.0

Molecular weight: 8.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R7EYT3|A0A0R7EYT3_9BBAC Uncharacterized protein OS=Diatraea saccharalis granulovirus OX=1675862 GN=ORF-73 PE=4 SV=1
MM1 pKa = 6.52TRR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84SLRR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84SRR13 pKa = 11.84SPRR16 pKa = 11.84RR17 pKa = 11.84RR18 pKa = 11.84RR19 pKa = 11.84SRR21 pKa = 11.84SPTQHH26 pKa = 4.86YY27 pKa = 9.71RR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84SRR32 pKa = 11.84SRR34 pKa = 11.84STSPYY39 pKa = 8.58RR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84SRR44 pKa = 11.84SRR46 pKa = 11.84SRR48 pKa = 11.84SPYY51 pKa = 7.33RR52 pKa = 11.84RR53 pKa = 11.84RR54 pKa = 11.84YY55 pKa = 9.11SRR57 pKa = 11.84HH58 pKa = 4.42EE59 pKa = 3.84QVV61 pKa = 3.45

Molecular weight: 7.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

125

0

125

31082

49

1127

248.7

29.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.201 ± 0.163

2.513 ± 0.126

6.155 ± 0.148

6.666 ± 0.274

5.46 ± 0.203

3.748 ± 0.174

2.133 ± 0.081

7.339 ± 0.185

7.779 ± 0.337

9.539 ± 0.172

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.725 ± 0.128

7.915 ± 0.185

3.272 ± 0.296

2.76 ± 0.101

4.717 ± 0.151

5.569 ± 0.165

5.778 ± 0.172

6.65 ± 0.175

1.097 ± 0.082

4.964 ± 0.147
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski