Geminiviridae sp.

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; unclassified Geminiviridae

Average proteome isoelectric point is 8.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A385E372|A0A385E372_9GEMI Uncharacterized protein OS=Geminiviridae sp. OX=2202566 PE=4 SV=1
MM1 pKa = 6.58TTPAGRR7 pKa = 11.84IGKK10 pKa = 9.38ARR12 pKa = 11.84TKK14 pKa = 10.23EE15 pKa = 3.82WFQTFPKK22 pKa = 8.93WAHH25 pKa = 5.72EE26 pKa = 3.96DD27 pKa = 3.56RR28 pKa = 11.84EE29 pKa = 4.57KK30 pKa = 10.63ILQLLIPLGIQSAKK44 pKa = 10.19VALEE48 pKa = 3.73HH49 pKa = 7.12HH50 pKa = 7.03EE51 pKa = 4.96DD52 pKa = 3.81GTPHH56 pKa = 5.87FHH58 pKa = 7.76AIYY61 pKa = 10.69SLTLKK66 pKa = 8.67KK67 pKa = 9.17TKK69 pKa = 9.55PQLVKK74 pKa = 10.52YY75 pKa = 9.04FKK77 pKa = 10.66INLPDD82 pKa = 3.96DD83 pKa = 4.02YY84 pKa = 11.31KK85 pKa = 10.95RR86 pKa = 11.84CTVLRR91 pKa = 11.84ALEE94 pKa = 4.0PAKK97 pKa = 10.61SSKK100 pKa = 10.48QLTNYY105 pKa = 9.96LDD107 pKa = 4.95KK108 pKa = 11.26EE109 pKa = 4.17DD110 pKa = 4.21TDD112 pKa = 4.77YY113 pKa = 11.35ISYY116 pKa = 7.86WQPPNLDD123 pKa = 4.28HH124 pKa = 7.63LNDD127 pKa = 3.58LCSRR131 pKa = 11.84AGLPDD136 pKa = 3.73YY137 pKa = 9.39ATLQVQIRR145 pKa = 11.84QQRR148 pKa = 11.84AHH150 pKa = 6.48EE151 pKa = 4.22RR152 pKa = 11.84LCSRR156 pKa = 11.84ALAAVHH162 pKa = 6.11EE163 pKa = 4.78KK164 pKa = 10.24EE165 pKa = 4.64LSVSNEE171 pKa = 3.2FRR173 pKa = 11.84NLLDD177 pKa = 3.82SFSGTEE183 pKa = 3.8NLAIMKK189 pKa = 9.71NEE191 pKa = 3.83KK192 pKa = 10.84GIDD195 pKa = 3.5TVAMFIASCKK205 pKa = 10.37DD206 pKa = 3.13VLKK209 pKa = 9.7YY210 pKa = 9.38TGYY213 pKa = 11.35

Molecular weight: 24.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A385E5J9|A0A385E5J9_9GEMI Capsid protein OS=Geminiviridae sp. OX=2202566 PE=4 SV=1
MM1 pKa = 7.89LEE3 pKa = 4.25RR4 pKa = 11.84CTLSPIRR11 pKa = 11.84CASPVPWGITLRR23 pKa = 11.84TLVGIVAVVRR33 pKa = 11.84GTSARR38 pKa = 11.84VSNPSMNFRR47 pKa = 11.84SGAISRR53 pKa = 11.84VRR55 pKa = 11.84TLRR58 pKa = 11.84ANEE61 pKa = 3.83RR62 pKa = 11.84TVVLRR67 pKa = 11.84LRR69 pKa = 11.84LGRR72 pKa = 11.84LRR74 pKa = 11.84RR75 pKa = 11.84LLLILLNAIAPFLYY89 pKa = 10.57VGLSLDD95 pKa = 4.86LII97 pKa = 4.66

Molecular weight: 10.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

635

83

242

158.8

18.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.661 ± 0.458

1.732 ± 0.296

4.724 ± 0.846

4.252 ± 0.765

2.992 ± 0.259

5.669 ± 0.759

2.52 ± 0.631

5.827 ± 0.456

4.724 ± 1.75

10.551 ± 1.896

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.575 ± 0.217

3.937 ± 0.11

5.669 ± 0.507

3.465 ± 1.138

9.606 ± 2.109

6.142 ± 0.453

6.614 ± 0.91

5.669 ± 1.33

1.575 ± 0.573

4.094 ± 0.698
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski