Corynebacterium frankenforstense DSM 45800

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium frankenforstense

Average proteome isoelectric point is 5.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1801 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L7CS68|A0A1L7CS68_9CORY PspC domain-containing protein OS=Corynebacterium frankenforstense DSM 45800 OX=1437875 GN=CFRA_04690 PE=4 SV=1
MM1 pKa = 7.76SDD3 pKa = 3.57DD4 pKa = 4.37LKK6 pKa = 11.46SIGLDD11 pKa = 3.22FDD13 pKa = 3.77RR14 pKa = 11.84WQDD17 pKa = 3.24AVEE20 pKa = 4.03AAIGTDD26 pKa = 3.01RR27 pKa = 11.84LAVTGAVRR35 pKa = 11.84GGQLIQYY42 pKa = 8.71SDD44 pKa = 3.61PSGAQINILAVEE56 pKa = 5.27PYY58 pKa = 9.01STWAGFDD65 pKa = 3.5AQSQTTGTLDD75 pKa = 3.24MVNDD79 pKa = 3.5VLALVDD85 pKa = 3.64VTDD88 pKa = 4.06PAGQEE93 pKa = 4.06LGTITANLSQGPLFYY108 pKa = 10.63EE109 pKa = 4.37VGPQPEE115 pKa = 4.26QPLGITALALDD126 pKa = 4.01AKK128 pKa = 10.24VYY130 pKa = 10.23PSDD133 pKa = 3.72VEE135 pKa = 4.21YY136 pKa = 10.93EE137 pKa = 4.09KK138 pKa = 10.92ATGEE142 pKa = 4.31VFGVVYY148 pKa = 10.77SEE150 pKa = 4.34GAQLVASGSGAAVPDD165 pKa = 4.12AGAQFSARR173 pKa = 11.84VITAEE178 pKa = 4.33RR179 pKa = 11.84RR180 pKa = 11.84TSDD183 pKa = 3.04LTGQAFIHH191 pKa = 5.99ATVEE195 pKa = 4.44GPFPFDD201 pKa = 2.91VCLPDD206 pKa = 4.71AADD209 pKa = 3.67VPQPGAVIAGTALMAASVLVTGGGCGGSGGCGCGAGGCGCGGHH252 pKa = 6.68

Molecular weight: 25.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L7CV99|A0A1L7CV99_9CORY Antibiotic biosynthesis monooxygenase OS=Corynebacterium frankenforstense DSM 45800 OX=1437875 GN=CFRA_11350 PE=4 SV=1
MM1 pKa = 7.53SKK3 pKa = 10.53GKK5 pKa = 8.66RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84AKK17 pKa = 9.81KK18 pKa = 9.26HH19 pKa = 4.29GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVAARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.72GRR42 pKa = 11.84AKK44 pKa = 9.63LTAA47 pKa = 4.21

Molecular weight: 5.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1801

0

1801

600005

40

3139

333.2

35.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.231 ± 0.105

0.716 ± 0.016

6.571 ± 0.05

6.739 ± 0.058

3.041 ± 0.035

9.324 ± 0.053

2.168 ± 0.029

3.946 ± 0.046

2.504 ± 0.054

9.485 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.014 ± 0.024

2.248 ± 0.028

5.212 ± 0.044

2.576 ± 0.029

7.209 ± 0.061

4.883 ± 0.031

5.895 ± 0.037

8.862 ± 0.056

1.335 ± 0.023

2.041 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski