Gordonia phage Apricot

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Apricotvirus; Gordonia virus Apricot

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 101 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345L185|A0A345L185_9CAUD Uncharacterized protein OS=Gordonia phage Apricot OX=2250319 GN=78 PE=4 SV=1
MM1 pKa = 7.6SIADD5 pKa = 3.71DD6 pKa = 3.73ARR8 pKa = 11.84AKK10 pKa = 11.0LEE12 pKa = 4.55GITPGSWSVDD22 pKa = 3.58YY23 pKa = 7.56EE24 pKa = 4.3TSDD27 pKa = 3.44CFPYY31 pKa = 9.49EE32 pKa = 4.16TYY34 pKa = 10.03PYY36 pKa = 10.09AISGPRR42 pKa = 11.84NSGLDD47 pKa = 3.49VPHH50 pKa = 7.19VSDD53 pKa = 4.64EE54 pKa = 3.83YY55 pKa = 9.6RR56 pKa = 11.84AEE58 pKa = 4.29YY59 pKa = 8.9GHH61 pKa = 6.45QMSEE65 pKa = 3.9VCGISDD71 pKa = 3.82QDD73 pKa = 3.84AEE75 pKa = 4.92FIAAAPDD82 pKa = 3.81LVRR85 pKa = 11.84GLLAEE90 pKa = 4.78LDD92 pKa = 3.73QAKK95 pKa = 10.47GMDD98 pKa = 3.84LSKK101 pKa = 10.52IAAVTPCTCSAARR114 pKa = 11.84AQRR117 pKa = 11.84DD118 pKa = 3.28AALATIQEE126 pKa = 4.05VRR128 pKa = 11.84DD129 pKa = 3.73YY130 pKa = 10.71CEE132 pKa = 4.83SRR134 pKa = 11.84ITDD137 pKa = 4.13PGDD140 pKa = 4.15GIDD143 pKa = 4.77DD144 pKa = 5.27HH145 pKa = 7.9IDD147 pKa = 3.5PADD150 pKa = 3.77LLRR153 pKa = 11.84ILGGEE158 pKa = 4.14SS159 pKa = 2.9

Molecular weight: 17.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345L193|A0A345L193_9CAUD Uncharacterized protein OS=Gordonia phage Apricot OX=2250319 GN=86 PE=4 SV=1
MM1 pKa = 7.69SDD3 pKa = 2.69ILVRR7 pKa = 11.84RR8 pKa = 11.84ARR10 pKa = 11.84TRR12 pKa = 11.84PRR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84SHH18 pKa = 6.65KK19 pKa = 10.81GGIHH23 pKa = 5.43YY24 pKa = 9.87WNVYY28 pKa = 8.49DD29 pKa = 4.65FRR31 pKa = 11.84GPKK34 pKa = 9.94VFIRR38 pKa = 11.84QYY40 pKa = 9.25TFSFHH45 pKa = 6.58GAALNAAIALSKK57 pKa = 11.49GEE59 pKa = 4.58GINPAALFAVQRR71 pKa = 11.84IEE73 pKa = 4.15HH74 pKa = 6.72GSMQDD79 pKa = 3.11PRR81 pKa = 11.84RR82 pKa = 11.84DD83 pKa = 3.09EE84 pKa = 4.47EE85 pKa = 4.49YY86 pKa = 10.53CGRR89 pKa = 11.84GVCAKK94 pKa = 10.03MSGHH98 pKa = 7.53PGRR101 pKa = 11.84CGVV104 pKa = 3.49

Molecular weight: 11.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

101

0

101

16775

28

1803

166.1

18.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.772 ± 0.505

1.019 ± 0.148

6.557 ± 0.237

6.194 ± 0.299

2.343 ± 0.161

8.25 ± 0.373

2.259 ± 0.198

4.387 ± 0.16

3.356 ± 0.224

7.887 ± 0.201

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.247 ± 0.138

2.945 ± 0.187

5.621 ± 0.239

3.41 ± 0.249

7.684 ± 0.365

6.051 ± 0.228

6.671 ± 0.224

7.642 ± 0.445

2.206 ± 0.175

2.498 ± 0.124
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski