Arthrobacter phage Mendel

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Anjalivirus; Arthobacter virus Mendel

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 28 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G3M0K4|A0A3G3M0K4_9CAUD Uncharacterized protein OS=Arthrobacter phage Mendel OX=2484218 GN=1 PE=4 SV=1
MM1 pKa = 6.74VTTATGVFPYY11 pKa = 10.47RR12 pKa = 11.84LQPLNNISAFTYY24 pKa = 8.76RR25 pKa = 11.84TGVTYY30 pKa = 11.08AEE32 pKa = 4.22MLEE35 pKa = 4.03EE36 pKa = 3.91LRR38 pKa = 11.84VYY40 pKa = 10.71INDD43 pKa = 3.43TMRR46 pKa = 11.84PEE48 pKa = 4.2FNSVILSVLNDD59 pKa = 3.74FQAGIEE65 pKa = 4.1NAEE68 pKa = 4.08TRR70 pKa = 11.84VVQSEE75 pKa = 4.84TEE77 pKa = 4.23FTALMDD83 pKa = 4.2DD84 pKa = 3.0ARR86 pKa = 11.84AYY88 pKa = 11.03VDD90 pKa = 4.69ASVQFINNKK99 pKa = 8.31TGQAQIQRR107 pKa = 11.84VTLTAPYY114 pKa = 9.51TVTIDD119 pKa = 3.7PLWPNNHH126 pKa = 7.57PINIVLTQDD135 pKa = 3.04AAGGHH140 pKa = 5.81AVTWDD145 pKa = 3.55SEE147 pKa = 4.58DD148 pKa = 3.38INGSVSVSTAPNAEE162 pKa = 3.76TDD164 pKa = 3.64FWLVPEE170 pKa = 5.39GDD172 pKa = 4.18GTWTAVQYY180 pKa = 8.48VTAVQLAGEE189 pKa = 4.33VATINTALGTKK200 pKa = 10.05ANSSSLATKK209 pKa = 10.12ADD211 pKa = 3.31KK212 pKa = 10.23ATTITTSKK220 pKa = 9.66PLYY223 pKa = 10.09GIAGVIRR230 pKa = 11.84NTGAGWDD237 pKa = 3.9VINDD241 pKa = 3.87AGHH244 pKa = 6.0EE245 pKa = 4.32PINIDD250 pKa = 3.46NVVSDD255 pKa = 4.15GDD257 pKa = 4.42KK258 pKa = 9.85ITINYY263 pKa = 6.79GTLGASKK270 pKa = 10.47VGTFIVTPDD279 pKa = 3.46EE280 pKa = 4.32KK281 pKa = 11.22LNEE284 pKa = 3.91QGFQVGASVGPTSTSIYY301 pKa = 9.52LSRR304 pKa = 11.84SIPSYY309 pKa = 10.62SDD311 pKa = 3.2YY312 pKa = 11.4VAYY315 pKa = 9.69TSGAFVSANGVFTCTWNATDD335 pKa = 5.22GYY337 pKa = 10.64LQVTHH342 pKa = 6.02PTIIGSALNVSLAGRR357 pKa = 11.84PGTALNYY364 pKa = 8.54TPVVAGDD371 pKa = 3.86LTTGSTFIAIEE382 pKa = 3.97FRR384 pKa = 11.84DD385 pKa = 3.56AAGNQVMTPDD395 pKa = 2.86TNMRR399 pKa = 11.84VFVTHH404 pKa = 6.71GGGFVPSVDD413 pKa = 3.29PSTVTTATYY422 pKa = 10.09PNSNLWIYY430 pKa = 11.44AVMQDD435 pKa = 3.2

Molecular weight: 46.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G3M0F4|A0A3G3M0F4_9CAUD Terminase OS=Arthrobacter phage Mendel OX=2484218 GN=18 PE=4 SV=1
MM1 pKa = 7.92GDD3 pKa = 3.42TMHH6 pKa = 7.58KK7 pKa = 9.8ATATPLTQLKK17 pKa = 9.81EE18 pKa = 3.77RR19 pKa = 11.84LARR22 pKa = 11.84LGRR25 pKa = 11.84NNLHH29 pKa = 5.97RR30 pKa = 11.84CYY32 pKa = 10.8GKK34 pKa = 10.26RR35 pKa = 11.84CADD38 pKa = 3.68HH39 pKa = 6.36TNNWYY44 pKa = 10.18AWATGTAKK52 pKa = 10.66

Molecular weight: 5.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

28

0

28

5872

40

733

209.7

22.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.746 ± 0.465

0.613 ± 0.125

6.233 ± 0.331

5.109 ± 0.5

3.883 ± 0.411

8.345 ± 0.561

1.839 ± 0.253

5.381 ± 0.311

4.155 ± 0.478

7.084 ± 0.414

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.265 ± 0.191

5.211 ± 0.471

5.126 ± 0.349

3.815 ± 0.324

4.905 ± 0.478

4.973 ± 0.256

8.328 ± 0.651

6.574 ± 0.506

1.686 ± 0.113

3.73 ± 0.361
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski