Bacteroides faecichinchillae

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4051 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5FCR9|A0A1M5FCR9_9BACE Trk-type K+ transport system membrane component OS=Bacteroides faecichinchillae OX=871325 GN=SAMN05444349_1437 PE=4 SV=1
MM1 pKa = 7.54LRR3 pKa = 11.84FKK5 pKa = 10.92YY6 pKa = 8.65STWAIVCMLVAFSFSACSDD25 pKa = 3.41DD26 pKa = 6.05DD27 pKa = 4.78EE28 pKa = 6.91NDD30 pKa = 3.58DD31 pKa = 4.19TLVPPSNIVEE41 pKa = 4.25ALKK44 pKa = 10.46QLYY47 pKa = 9.59PSAQNIEE54 pKa = 3.92WEE56 pKa = 4.45MKK58 pKa = 9.06GVYY61 pKa = 9.35YY62 pKa = 10.82VADD65 pKa = 3.63CWLSGDD71 pKa = 4.5EE72 pKa = 4.14LDD74 pKa = 4.35VWFDD78 pKa = 4.45ANANWLMTEE87 pKa = 4.49VEE89 pKa = 4.65LDD91 pKa = 4.81DD92 pKa = 5.14INQLVPAVYY101 pKa = 8.67TAFMNSSYY109 pKa = 11.03NSWVVTDD116 pKa = 4.01VYY118 pKa = 11.63VLTFPQSPMEE128 pKa = 4.07SVVQVKK134 pKa = 10.23QGEE137 pKa = 4.34QRR139 pKa = 11.84HH140 pKa = 5.41ALYY143 pKa = 8.31FTQDD147 pKa = 2.51GGLIHH152 pKa = 7.54DD153 pKa = 4.71KK154 pKa = 10.74DD155 pKa = 3.7ISNGDD160 pKa = 3.53DD161 pKa = 3.94TNWPPALPGG170 pKa = 3.5

Molecular weight: 19.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5FSF0|A0A1M5FSF0_9BACE Lysophospholipase L1 OS=Bacteroides faecichinchillae OX=871325 GN=SAMN05444349_1494 PE=4 SV=1
MM1 pKa = 7.85EE2 pKa = 4.69ITHH5 pKa = 5.52VTHH8 pKa = 6.21SCSRR12 pKa = 11.84DD13 pKa = 3.35DD14 pKa = 4.56FVIKK18 pKa = 10.66SFLTHH23 pKa = 5.82PHH25 pKa = 5.57LHH27 pKa = 6.25KK28 pKa = 10.72SPYY31 pKa = 9.77RR32 pKa = 11.84RR33 pKa = 11.84IIMSRR38 pKa = 11.84PIIIPTKK45 pKa = 9.25PIPRR49 pKa = 11.84IQLLTVILVRR59 pKa = 11.84LNTDD63 pKa = 3.26CRR65 pKa = 11.84SKK67 pKa = 10.8RR68 pKa = 11.84PSKK71 pKa = 10.42RR72 pKa = 11.84IISIRR77 pKa = 11.84LLHH80 pKa = 6.46IAILVCHH87 pKa = 6.41NPGIPLMILQIEE99 pKa = 4.42MVLPIRR105 pKa = 11.84EE106 pKa = 4.02THH108 pKa = 5.93IPSLIEE114 pKa = 3.36QHH116 pKa = 6.18PQHH119 pKa = 6.74PVLIDD124 pKa = 4.45RR125 pKa = 11.84ISTVIRR131 pKa = 11.84CC132 pKa = 3.68

Molecular weight: 15.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4051

0

4051

1408408

28

1938

347.7

39.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.507 ± 0.038

1.297 ± 0.013

5.438 ± 0.028

6.62 ± 0.041

4.636 ± 0.025

6.582 ± 0.032

1.864 ± 0.016

7.444 ± 0.035

6.996 ± 0.032

9.073 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.74 ± 0.017

5.311 ± 0.031

3.683 ± 0.019

3.468 ± 0.021

4.433 ± 0.027

6.193 ± 0.032

5.563 ± 0.027

6.311 ± 0.032

1.261 ± 0.017

4.578 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski