Jembrana disease virus (JDV)

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus

Average proteome isoelectric point is 7.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q82854-2|TAT-2_JEMBR Isoform of Q82854 Isoform Short of Protein Tat OS=Jembrana disease virus OX=36370 GN=tat PE=1 SV=1
MM1 pKa = 7.62SNLGAQTRR9 pKa = 11.84YY10 pKa = 10.02QLLNAQEE17 pKa = 4.39DD18 pKa = 4.18TDD20 pKa = 4.18PAGDD24 pKa = 3.77GDD26 pKa = 3.87QPDD29 pKa = 3.78DD30 pKa = 4.17HH31 pKa = 7.54RR32 pKa = 11.84SGDD35 pKa = 3.81TPRR38 pKa = 11.84SGVPSGGWSQKK49 pKa = 10.24LSEE52 pKa = 4.29GKK54 pKa = 10.58KK55 pKa = 9.57IGCLILRR62 pKa = 11.84TEE64 pKa = 4.0WQNWRR69 pKa = 11.84NDD71 pKa = 3.0LRR73 pKa = 11.84TLRR76 pKa = 11.84WLTLGGKK83 pKa = 8.99ILQLPLSLLVLLVRR97 pKa = 11.84ILLHH101 pKa = 6.13ILSPTFQNQRR111 pKa = 11.84GWTVGRR117 pKa = 11.84KK118 pKa = 7.86GTGGDD123 pKa = 3.65DD124 pKa = 3.56RR125 pKa = 11.84EE126 pKa = 4.33LSPEE130 pKa = 4.19LEE132 pKa = 4.26YY133 pKa = 11.2LSWTGSSQEE142 pKa = 4.01MVEE145 pKa = 3.98MRR147 pKa = 11.84DD148 pKa = 3.73LKK150 pKa = 11.23EE151 pKa = 3.55EE152 pKa = 5.15DD153 pKa = 3.38IPEE156 pKa = 4.04EE157 pKa = 4.43GIRR160 pKa = 11.84PVEE163 pKa = 3.96MM164 pKa = 4.93

Molecular weight: 18.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q82855-2|REV-2_JEMBR Isoform of Q82855 Isoform Short of Protein Rev OS=Jembrana disease virus OX=36370 GN=rev PE=4 SV=1
MM1 pKa = 7.63PGPWATTLTFPGHH14 pKa = 6.14NGGFGGGPKK23 pKa = 9.97CWLFWNTCAGPRR35 pKa = 11.84RR36 pKa = 11.84VCPKK40 pKa = 9.6CSCPICVWHH49 pKa = 6.79CQLCFLQKK57 pKa = 10.9GLGIRR62 pKa = 11.84HH63 pKa = 6.72DD64 pKa = 3.68GRR66 pKa = 11.84RR67 pKa = 11.84KK68 pKa = 9.85KK69 pKa = 10.56RR70 pKa = 11.84GTRR73 pKa = 11.84GKK75 pKa = 10.3GRR77 pKa = 11.84KK78 pKa = 7.47IHH80 pKa = 5.47YY81 pKa = 8.97ARR83 pKa = 11.84SITEE87 pKa = 3.89SGGQRR92 pKa = 11.84APNCAA97 pKa = 3.33

Molecular weight: 10.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

2

9

3635

97

1432

403.9

45.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.025 ± 0.678

2.476 ± 0.626

4.539 ± 0.353

7.455 ± 0.749

2.503 ± 0.307

8.171 ± 1.144

2.669 ± 0.25

5.475 ± 0.805

6.162 ± 0.915

9.106 ± 0.748

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.871 ± 0.178

3.659 ± 0.36

6.052 ± 0.499

4.677 ± 0.412

7.345 ± 1.004

5.117 ± 0.754

5.695 ± 0.442

5.695 ± 0.863

2.806 ± 0.345

2.503 ± 0.376
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski