Citrus chlorotic dwarf associated virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Citlodavirus

Average proteome isoelectric point is 7.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I6X8D9|I6X8D9_9GEMI Replication-associated protein (Fragment) OS=Citrus chlorotic dwarf associated virus OX=1202142 PE=4 SV=1
MM1 pKa = 7.37CHH3 pKa = 6.11YY4 pKa = 10.41ALSVQDD10 pKa = 4.22LPEE13 pKa = 4.26SLFGLMSMLSVRR25 pKa = 11.84YY26 pKa = 8.35LKK28 pKa = 10.63CVEE31 pKa = 3.93EE32 pKa = 5.02RR33 pKa = 11.84EE34 pKa = 4.35MEE36 pKa = 4.14RR37 pKa = 11.84SLMVGNPVGGALGNARR53 pKa = 11.84ILIRR57 pKa = 11.84LIRR60 pKa = 11.84RR61 pKa = 11.84YY62 pKa = 9.47CRR64 pKa = 11.84CRR66 pKa = 11.84DD67 pKa = 3.14WVRR70 pKa = 11.84KK71 pKa = 9.55GRR73 pKa = 11.84VNGEE77 pKa = 3.79YY78 pKa = 10.38QEE80 pKa = 4.47WRR82 pKa = 11.84TIWDD86 pKa = 4.3KK87 pKa = 11.28PCNDD91 pKa = 4.68CGDD94 pKa = 4.08AADD97 pKa = 4.27VGHH100 pKa = 6.76KK101 pKa = 9.21EE102 pKa = 3.93KK103 pKa = 11.08KK104 pKa = 8.14EE105 pKa = 3.78AQVAEE110 pKa = 4.42KK111 pKa = 10.63GKK113 pKa = 9.84EE114 pKa = 3.94AQDD117 pKa = 3.4CWGCICEE124 pKa = 5.02GPAQEE129 pKa = 5.4KK130 pKa = 10.29VEE132 pKa = 4.08QRR134 pKa = 11.84CSSGVV139 pKa = 3.12

Molecular weight: 15.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I6XMA9|I6XMA9_9GEMI Movement protein BC1 OS=Citrus chlorotic dwarf associated virus OX=1202142 PE=3 SV=1
MM1 pKa = 7.27VSTRR5 pKa = 11.84SGGQYY10 pKa = 7.93GTSRR14 pKa = 11.84VTTVEE19 pKa = 4.29TLPMWATKK27 pKa = 9.65RR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84RR31 pKa = 11.84PRR33 pKa = 11.84WPRR36 pKa = 11.84KK37 pKa = 7.42EE38 pKa = 4.19KK39 pKa = 10.34KK40 pKa = 9.58PKK42 pKa = 8.88IAGAVFVKK50 pKa = 10.33ARR52 pKa = 11.84PRR54 pKa = 11.84RR55 pKa = 11.84KK56 pKa = 9.35SSKK59 pKa = 10.14GVPPGCKK66 pKa = 9.88GPCKK70 pKa = 9.45THH72 pKa = 5.31TVDD75 pKa = 3.77VIKK78 pKa = 9.89TIYY81 pKa = 10.0HH82 pKa = 7.04DD83 pKa = 3.92GRR85 pKa = 11.84GSGMISNIDD94 pKa = 3.42RR95 pKa = 11.84GDD97 pKa = 3.52EE98 pKa = 3.84LGQRR102 pKa = 11.84EE103 pKa = 4.13GRR105 pKa = 11.84KK106 pKa = 9.19IRR108 pKa = 11.84VSRR111 pKa = 11.84MIIRR115 pKa = 11.84GKK117 pKa = 9.83IWLDD121 pKa = 3.25VNNASVPGSNLAKK134 pKa = 10.0IWIFKK139 pKa = 9.87DD140 pKa = 3.25RR141 pKa = 11.84RR142 pKa = 11.84PGTEE146 pKa = 3.16PVAFNALMDD155 pKa = 4.0MSDD158 pKa = 4.42SEE160 pKa = 4.32PLSAFVKK167 pKa = 9.91VDD169 pKa = 3.05YY170 pKa = 10.25RR171 pKa = 11.84DD172 pKa = 3.29RR173 pKa = 11.84FIALHH178 pKa = 5.79TMTVDD183 pKa = 3.0LHH185 pKa = 6.18GGKK188 pKa = 10.07DD189 pKa = 3.64FRR191 pKa = 11.84VDD193 pKa = 3.82EE194 pKa = 4.86LDD196 pKa = 3.57LDD198 pKa = 4.05EE199 pKa = 5.33LVEE202 pKa = 4.28INSDD206 pKa = 3.64VLFSHH211 pKa = 7.09EE212 pKa = 4.67DD213 pKa = 3.56DD214 pKa = 4.3GSVAHH219 pKa = 7.03TIQNGIFIYY228 pKa = 8.78YY229 pKa = 9.6ACSDD233 pKa = 3.54PRR235 pKa = 11.84QTVQITAQARR245 pKa = 11.84LYY247 pKa = 10.75FYY249 pKa = 10.96DD250 pKa = 3.54STSNN254 pKa = 3.23

Molecular weight: 28.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1103

135

306

220.6

25.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.074 ± 0.44

3.173 ± 0.867

6.346 ± 0.774

5.621 ± 1.078

3.626 ± 0.737

5.984 ± 1.082

2.539 ± 0.327

5.44 ± 0.767

6.346 ± 0.288

6.981 ± 0.65

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.539 ± 0.306

4.17 ± 0.448

5.802 ± 0.745

3.717 ± 0.408

7.525 ± 0.869

8.432 ± 1.075

3.989 ± 0.891

6.437 ± 0.766

1.813 ± 0.265

3.445 ± 0.528
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski