Chrysanthemum virus R

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus; unclassified Carlavirus

Average proteome isoelectric point is 7.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P1JI50|A0A2P1JI50_9VIRU Triple gene block protein 1 OS=Chrysanthemum virus R OX=2116736 GN=ORF2 PE=4 SV=1
MM1 pKa = 7.86DD2 pKa = 4.15VLVNLAKK9 pKa = 10.71NFGFHH14 pKa = 6.76RR15 pKa = 11.84VCTTLNKK22 pKa = 10.11PIVFHH27 pKa = 6.23CVPGAGKK34 pKa = 8.44STLIRR39 pKa = 11.84DD40 pKa = 4.02CCRR43 pKa = 11.84ADD45 pKa = 3.25SRR47 pKa = 11.84FVAVTLGKK55 pKa = 10.28EE56 pKa = 4.26DD57 pKa = 3.85EE58 pKa = 4.45RR59 pKa = 11.84DD60 pKa = 3.42LTGVGITKK68 pKa = 10.5YY69 pKa = 10.59SGTIPDD75 pKa = 4.24CEE77 pKa = 4.1YY78 pKa = 10.75PLLDD82 pKa = 4.51EE83 pKa = 4.34YY84 pKa = 11.29TLAEE88 pKa = 4.3SLSEE92 pKa = 3.77GWFAIFGDD100 pKa = 4.95PIQAANRR107 pKa = 11.84VVLRR111 pKa = 11.84AHH113 pKa = 6.28FTCNLSRR120 pKa = 11.84RR121 pKa = 11.84FGKK124 pKa = 8.65CTAQFLRR131 pKa = 11.84EE132 pKa = 4.03LGFDD136 pKa = 3.52VVAEE140 pKa = 4.47GEE142 pKa = 4.3DD143 pKa = 3.65TVQISGIYY151 pKa = 10.14VEE153 pKa = 5.11DD154 pKa = 4.01PRR156 pKa = 11.84DD157 pKa = 3.56KK158 pKa = 10.4IIYY161 pKa = 8.49YY162 pKa = 9.61EE163 pKa = 4.16PEE165 pKa = 4.0VGCLLRR171 pKa = 11.84SHH173 pKa = 6.32SVEE176 pKa = 3.63ASHH179 pKa = 5.9ITEE182 pKa = 4.54VIGQTFDD189 pKa = 2.91SVTFVTASEE198 pKa = 4.57YY199 pKa = 10.52PVDD202 pKa = 3.95RR203 pKa = 11.84SSAYY207 pKa = 9.83QCLTRR212 pKa = 11.84HH213 pKa = 6.01RR214 pKa = 11.84KK215 pKa = 8.93SLLILAPNASYY226 pKa = 11.34SSAA229 pKa = 3.28

Molecular weight: 25.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P1JI50|A0A2P1JI50_9VIRU Triple gene block protein 1 OS=Chrysanthemum virus R OX=2116736 GN=ORF2 PE=4 SV=1
MM1 pKa = 7.95PLTPPPDD8 pKa = 3.28HH9 pKa = 6.72TKK11 pKa = 11.0AFLAIAVGFSCALIISLFTRR31 pKa = 11.84STLPQVGDD39 pKa = 3.8QIHH42 pKa = 6.21SLPHH46 pKa = 5.54GGWYY50 pKa = 9.97KK51 pKa = 11.07DD52 pKa = 3.38GTKK55 pKa = 10.0QIYY58 pKa = 9.32YY59 pKa = 10.48GRR61 pKa = 11.84PNKK64 pKa = 10.26LNSVEE69 pKa = 4.12KK70 pKa = 10.53QGFLIGQPWAIVIILIALIILSSFRR95 pKa = 11.84GPGRR99 pKa = 11.84CMVCGQRR106 pKa = 11.84HH107 pKa = 4.24

Molecular weight: 11.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2888

63

2075

481.3

54.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.752 ± 1.041

2.77 ± 0.472

4.363 ± 0.351

8.241 ± 1.033

4.605 ± 0.497

6.717 ± 0.402

2.528 ± 0.34

5.298 ± 0.676

6.717 ± 0.913

8.934 ± 0.503

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.355 ± 0.36

3.913 ± 0.373

4.12 ± 0.42

2.597 ± 0.379

6.44 ± 0.805

7.133 ± 0.157

5.436 ± 0.433

6.094 ± 0.623

1.108 ± 0.22

3.878 ± 0.318
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski