Salinibacterium xinjiangense

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Salinibacterium

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2810 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2C8YSW6|A0A2C8YSW6_9MICO Fur family transcriptional regulator ferric uptake regulator OS=Salinibacterium xinjiangense OX=386302 GN=SAMN06296378_0608 PE=3 SV=1
MM1 pKa = 8.02RR2 pKa = 11.84ITRR5 pKa = 11.84TRR7 pKa = 11.84AIIVTGLVAGSLALTACSSPAAEE30 pKa = 4.6EE31 pKa = 4.04PASPSAAGAIDD42 pKa = 4.47LAAAGCPADD51 pKa = 5.46IKK53 pKa = 10.94IQTDD57 pKa = 3.37WNPEE61 pKa = 3.83AEE63 pKa = 4.3HH64 pKa = 5.63GHH66 pKa = 6.89LYY68 pKa = 10.94GLLGSDD74 pKa = 3.59YY75 pKa = 11.26TVDD78 pKa = 3.57TTNKK82 pKa = 8.59TVTGPLVVGGEE93 pKa = 4.09PTGVNVTILAGGPAVGFSQPNAQLYY118 pKa = 10.32SDD120 pKa = 5.2DD121 pKa = 5.03SIFMAYY127 pKa = 10.13VGTDD131 pKa = 3.07EE132 pKa = 6.01AIAHH136 pKa = 5.86SVDD139 pKa = 3.77LPTVGVFQPLEE150 pKa = 4.42KK151 pKa = 10.35DD152 pKa = 3.25PQMIMWDD159 pKa = 3.49PATYY163 pKa = 10.24PDD165 pKa = 3.93VEE167 pKa = 4.84SIADD171 pKa = 3.93LGKK174 pKa = 8.01TDD176 pKa = 3.1APIRR180 pKa = 11.84VFPGGVYY187 pKa = 9.07IDD189 pKa = 4.05YY190 pKa = 10.83FIGTGVLSADD200 pKa = 4.36QIDD203 pKa = 3.7ATYY206 pKa = 10.43DD207 pKa = 3.14GSPAVFVSEE216 pKa = 4.33GGKK219 pKa = 7.75TAQQGFASAEE229 pKa = 3.73PYY231 pKa = 9.81IYY233 pKa = 10.56KK234 pKa = 10.48NEE236 pKa = 3.83VAEE239 pKa = 4.05WGKK242 pKa = 10.11DD243 pKa = 3.28VKK245 pKa = 11.08YY246 pKa = 10.84QLVNDD251 pKa = 4.21AGFPKK256 pKa = 9.1YY257 pKa = 10.72AAMVSVRR264 pKa = 11.84PDD266 pKa = 3.27DD267 pKa = 3.49VTAYY271 pKa = 10.44ADD273 pKa = 3.87CLTALVPVMQQAEE286 pKa = 3.79IDD288 pKa = 4.26YY289 pKa = 11.16YY290 pKa = 11.47DD291 pKa = 4.03GTTLDD296 pKa = 3.63ATNALILDD304 pKa = 4.49LVDD307 pKa = 4.02QYY309 pKa = 11.75DD310 pKa = 3.85TGWVYY315 pKa = 10.99SQGVADD321 pKa = 4.24YY322 pKa = 10.97SVKK325 pKa = 9.49TQLADD330 pKa = 4.18EE331 pKa = 4.59IVSNGPDD338 pKa = 3.05ATLGNFDD345 pKa = 4.22DD346 pKa = 4.61ARR348 pKa = 11.84VAEE351 pKa = 4.6LFDD354 pKa = 3.46IVSPIFNKK362 pKa = 9.92QDD364 pKa = 2.76ITIADD369 pKa = 3.87GLAPTDD375 pKa = 3.98LYY377 pKa = 11.22TNEE380 pKa = 4.24FVDD383 pKa = 3.69MSLGLKK389 pKa = 9.76

Molecular weight: 41.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2C9A2H8|A0A2C9A2H8_9MICO Peptidyl-prolyl cis-trans isomerase B (Cyclophilin B) OS=Salinibacterium xinjiangense OX=386302 GN=SAMN06296378_2753 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2810

0

2810

898122

29

2018

319.6

34.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.546 ± 0.06

0.509 ± 0.011

5.997 ± 0.044

5.292 ± 0.048

3.383 ± 0.028

8.736 ± 0.042

1.895 ± 0.02

5.305 ± 0.035

2.349 ± 0.034

10.063 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.923 ± 0.019

2.443 ± 0.026

5.132 ± 0.03

2.881 ± 0.023

6.591 ± 0.045

6.457 ± 0.037

6.236 ± 0.043

8.811 ± 0.046

1.431 ± 0.02

2.018 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski