Vibrio phage Quinn

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Ermolyevavirinae; Cetovirus; unclassified Cetovirus

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 180 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6M9Z212|A0A6M9Z212_9CAUD Uncharacterized protein OS=Vibrio phage Quinn OX=2736265 GN=QUINN_11 PE=4 SV=1
MM1 pKa = 7.13VKK3 pKa = 10.55VIITFGCYY11 pKa = 10.13LEE13 pKa = 4.99TCHH16 pKa = 7.0EE17 pKa = 4.31MVLVTNRR24 pKa = 11.84DD25 pKa = 3.48TLTEE29 pKa = 4.16AEE31 pKa = 4.05HH32 pKa = 7.16DD33 pKa = 4.33KK34 pKa = 11.26INSEE38 pKa = 4.19VVYY41 pKa = 10.08PMAIEE46 pKa = 4.27TTDD49 pKa = 2.79GWVGSNGFCEE59 pKa = 4.76DD60 pKa = 4.15LDD62 pKa = 3.98DD63 pKa = 6.27AEE65 pKa = 5.79DD66 pKa = 3.58IEE68 pKa = 4.75EE69 pKa = 4.22AVEE72 pKa = 5.21DD73 pKa = 3.63EE74 pKa = 4.05AFYY77 pKa = 11.09YY78 pKa = 10.45SEE80 pKa = 4.75IYY82 pKa = 10.57DD83 pKa = 3.92PEE85 pKa = 4.17KK86 pKa = 10.82HH87 pKa = 7.15DD88 pKa = 4.23GFLMGCQDD96 pKa = 3.06EE97 pKa = 4.33WQIIEE102 pKa = 4.48EE103 pKa = 4.27IEE105 pKa = 3.94LL106 pKa = 3.79

Molecular weight: 12.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6M9Z3Q3|A0A6M9Z3Q3_9CAUD Uncharacterized protein OS=Vibrio phage Quinn OX=2736265 GN=QUINN_190 PE=4 SV=1
MM1 pKa = 7.8AKK3 pKa = 9.23RR4 pKa = 11.84SKK6 pKa = 10.37MIGIKK11 pKa = 9.91MSDD14 pKa = 3.72RR15 pKa = 11.84TRR17 pKa = 11.84KK18 pKa = 8.26MAGEE22 pKa = 3.94YY23 pKa = 10.34GIEE26 pKa = 3.78ILEE29 pKa = 4.0QRR31 pKa = 11.84RR32 pKa = 11.84SGLAKK37 pKa = 10.62VLGLLARR44 pKa = 11.84GTRR47 pKa = 11.84VSNHH51 pKa = 5.19PRR53 pKa = 11.84AVEE56 pKa = 3.66YY57 pKa = 9.12TAAQFGLL64 pKa = 3.85

Molecular weight: 7.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

180

0

180

35617

29

1018

197.9

22.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.699 ± 0.284

1.202 ± 0.09

6.354 ± 0.164

6.999 ± 0.256

4.032 ± 0.123

6.547 ± 0.176

2.075 ± 0.107

6.143 ± 0.118

7.199 ± 0.164

8.358 ± 0.198

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.757 ± 0.109

5.149 ± 0.151

3.428 ± 0.152

3.549 ± 0.15

4.4 ± 0.138

6.152 ± 0.267

6.084 ± 0.187

6.539 ± 0.155

1.393 ± 0.072

3.942 ± 0.13
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski