Sida yellow net virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L7YFH4|L7YFH4_9GEMI Capsid protein OS=Sida yellow net virus OX=1266977 PE=3 SV=1
MM1 pKa = 7.28PRR3 pKa = 11.84KK4 pKa = 10.11GSFCIKK10 pKa = 9.77AKK12 pKa = 10.62NYY14 pKa = 9.39FITYY18 pKa = 7.6PRR20 pKa = 11.84CSLTKK25 pKa = 10.62EE26 pKa = 3.94EE27 pKa = 4.55TLSQFLDD34 pKa = 3.05IQTPVNKK41 pKa = 10.0KK42 pKa = 9.66FIKK45 pKa = 9.67ICRR48 pKa = 11.84EE49 pKa = 3.52LHH51 pKa = 6.26EE52 pKa = 4.93NGEE55 pKa = 4.25PHH57 pKa = 6.94LHH59 pKa = 6.18VLLQFEE65 pKa = 5.61GKK67 pKa = 9.17FQCTNNRR74 pKa = 11.84LFDD77 pKa = 4.14LVSPTRR83 pKa = 11.84SAHH86 pKa = 4.86FHH88 pKa = 6.55PNIQGAKK95 pKa = 9.25SSSDD99 pKa = 3.11VKK101 pKa = 11.24SYY103 pKa = 10.79IDD105 pKa = 3.8KK106 pKa = 11.28DD107 pKa = 3.26GDD109 pKa = 3.91TIEE112 pKa = 4.14WGQFQVDD119 pKa = 3.41GRR121 pKa = 11.84SARR124 pKa = 11.84GGQQTANDD132 pKa = 3.91AAAEE136 pKa = 4.01ALNAPDD142 pKa = 4.52KK143 pKa = 10.32QTALQIIRR151 pKa = 11.84EE152 pKa = 3.99KK153 pKa = 10.97LPEE156 pKa = 4.14KK157 pKa = 10.59FLFQFHH163 pKa = 6.65NLNSNLNRR171 pKa = 11.84IFTKK175 pKa = 10.51APEE178 pKa = 4.04PWVPPFPLSSFTNVPDD194 pKa = 5.1EE195 pKa = 4.13MQEE198 pKa = 3.8WADD201 pKa = 3.73EE202 pKa = 4.25YY203 pKa = 11.01FGRR206 pKa = 11.84GSAARR211 pKa = 11.84PLRR214 pKa = 11.84PMSLIVEE221 pKa = 4.74GDD223 pKa = 3.31SRR225 pKa = 11.84TGKK228 pKa = 8.55TMWARR233 pKa = 11.84ALGPHH238 pKa = 6.63NYY240 pKa = 10.14LSGHH244 pKa = 6.9LDD246 pKa = 3.48FNSRR250 pKa = 11.84VYY252 pKa = 11.18SNEE255 pKa = 3.29VEE257 pKa = 4.32YY258 pKa = 11.37NVIDD262 pKa = 4.44DD263 pKa = 4.88VNPQYY268 pKa = 11.47LKK270 pKa = 10.5LKK272 pKa = 9.13HH273 pKa = 5.51WKK275 pKa = 9.67EE276 pKa = 3.98LIGAQKK282 pKa = 10.57DD283 pKa = 3.42WQSNCKK289 pKa = 9.43YY290 pKa = 10.35GKK292 pKa = 10.2ASSKK296 pKa = 10.85LKK298 pKa = 10.51VGYY301 pKa = 8.93HH302 pKa = 4.94QSCSAIQGEE311 pKa = 4.5GVSYY315 pKa = 10.94KK316 pKa = 10.58EE317 pKa = 4.03YY318 pKa = 10.79LDD320 pKa = 4.04KK321 pKa = 11.53EE322 pKa = 4.13EE323 pKa = 4.03NAALKK328 pKa = 10.48SWTLHH333 pKa = 4.44NAKK336 pKa = 10.29FIFLDD341 pKa = 3.55SPLYY345 pKa = 10.59QSATQSGEE353 pKa = 3.93EE354 pKa = 4.32EE355 pKa = 4.28RR356 pKa = 11.84NSPP359 pKa = 4.22

Molecular weight: 40.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L7YFH4|L7YFH4_9GEMI Capsid protein OS=Sida yellow net virus OX=1266977 PE=3 SV=1
MM1 pKa = 7.94PKK3 pKa = 9.54RR4 pKa = 11.84DD5 pKa = 3.67PSWRR9 pKa = 11.84QMAGTSKK16 pKa = 10.62VSRR19 pKa = 11.84TSNFSPRR26 pKa = 11.84GGGGPKK32 pKa = 9.71FNKK35 pKa = 9.66ASEE38 pKa = 4.21WVNRR42 pKa = 11.84PMYY45 pKa = 9.79RR46 pKa = 11.84KK47 pKa = 8.95PRR49 pKa = 11.84IYY51 pKa = 9.6RR52 pKa = 11.84TLRR55 pKa = 11.84TPDD58 pKa = 3.21VPRR61 pKa = 11.84GCEE64 pKa = 4.34GPCKK68 pKa = 9.32VQSYY72 pKa = 6.94EE73 pKa = 3.74QRR75 pKa = 11.84HH76 pKa = 6.38DD77 pKa = 3.16ISHH80 pKa = 6.13VGKK83 pKa = 10.58VMCISDD89 pKa = 3.41ITRR92 pKa = 11.84GNGITHH98 pKa = 6.78RR99 pKa = 11.84VGKK102 pKa = 9.44RR103 pKa = 11.84FCVKK107 pKa = 9.92SVYY110 pKa = 10.24ILGKK114 pKa = 9.73VWMDD118 pKa = 3.29EE119 pKa = 4.01NIKK122 pKa = 10.61LKK124 pKa = 10.79NHH126 pKa = 6.24TNSCMFWLVRR136 pKa = 11.84DD137 pKa = 3.74RR138 pKa = 11.84RR139 pKa = 11.84PYY141 pKa = 8.05GTPMDD146 pKa = 4.6FGQVFNMFDD155 pKa = 3.99NEE157 pKa = 4.11PSTATVKK164 pKa = 10.85NDD166 pKa = 2.82LRR168 pKa = 11.84DD169 pKa = 3.54RR170 pKa = 11.84FQVMHH175 pKa = 6.97KK176 pKa = 9.73FYY178 pKa = 11.33AKK180 pKa = 9.12VTGGQYY186 pKa = 11.1ASNEE190 pKa = 3.73QALVKK195 pKa = 10.5RR196 pKa = 11.84FWKK199 pKa = 10.3VNNHH203 pKa = 4.48VVYY206 pKa = 10.67NHH208 pKa = 5.8QEE210 pKa = 3.47AGKK213 pKa = 10.41YY214 pKa = 8.39EE215 pKa = 4.09NHH217 pKa = 6.52TEE219 pKa = 3.99NALLLYY225 pKa = 7.29MACTHH230 pKa = 7.07ASNPVYY236 pKa = 9.86ATLKK240 pKa = 9.47IRR242 pKa = 11.84IYY244 pKa = 10.59FYY246 pKa = 11.38DD247 pKa = 4.2SITNN251 pKa = 3.6

Molecular weight: 29.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

956

85

359

191.2

21.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.021 ± 0.872

1.883 ± 0.476

4.916 ± 0.737

5.021 ± 1.013

4.393 ± 0.507

5.753 ± 0.516

3.661 ± 0.595

5.23 ± 0.606

5.962 ± 1.191

6.904 ± 1.19

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.301 ± 0.696

5.962 ± 0.497

5.126 ± 0.708

4.812 ± 0.754

7.113 ± 1.255

8.264 ± 1.545

6.067 ± 1.016

5.649 ± 1.085

1.778 ± 0.126

4.184 ± 0.879
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski