Pediococcus claussenii (strain ATCC BAA-344 / DSM 14800 / JCM 18046 / KCTC 3811 / P06)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus; Pediococcus claussenii

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1877 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G8PCH7|G8PCH7_PEDCP Putative membrane protein insertion efficiency factor OS=Pediococcus claussenii (strain ATCC BAA-344 / DSM 14800 / JCM 18046 / KCTC 3811 / P06) OX=701521 GN=PECL_670 PE=3 SV=1
MM1 pKa = 7.42SFWRR5 pKa = 11.84KK6 pKa = 7.2NHH8 pKa = 6.45KK9 pKa = 8.84STNLNTKK16 pKa = 7.89NHH18 pKa = 5.34YY19 pKa = 10.85KK20 pKa = 9.61MYY22 pKa = 10.47KK23 pKa = 10.0AGKK26 pKa = 7.78QWLFAGITTIAGLGGQSIAGAKK48 pKa = 9.79ADD50 pKa = 4.08SLSATSTATKK60 pKa = 10.18DD61 pKa = 3.6VQDD64 pKa = 3.8QDD66 pKa = 3.8VLATGDD72 pKa = 3.67SAIIPAEE79 pKa = 3.99SSVASSSVATASATSATLSSASSAVSSSNSSNTSSASASSADD121 pKa = 3.68TSSSSSSVASGSNTTSSSVSSTSSSSATSSANASSNNSNSSSATSSTVNSSSNSAATSSTAEE183 pKa = 3.87SSSPVSSSSSVASITSNALSSATSGTQSLVSSGVTNTTSSSATTSSTATSSSAVASLSMSNSMSLSEE250 pKa = 4.14SQSLISLASLNIGSSVAASSAASSAKK276 pKa = 9.35KK277 pKa = 10.09VAMKK281 pKa = 10.74AMVMAATVAPTVAVNVGSLSYY302 pKa = 11.86NMGTQIAYY310 pKa = 9.56YY311 pKa = 10.64ALRR314 pKa = 11.84SWKK317 pKa = 10.37DD318 pKa = 2.94SGLNIVSLTPSWLLANFTAISALLTYY344 pKa = 9.26YY345 pKa = 10.01QANGTVLRR353 pKa = 11.84ADD355 pKa = 3.46GTMDD359 pKa = 4.0PSLIAALSGIYY370 pKa = 9.58AAPSWSGQTGIKK382 pKa = 10.38VSGSTAASSGYY393 pKa = 6.49TQNGSGWNNTDD404 pKa = 3.13YY405 pKa = 11.62TNDD408 pKa = 3.25YY409 pKa = 10.34YY410 pKa = 11.59LIGTVKK416 pKa = 10.64NPFSATDD423 pKa = 3.62YY424 pKa = 9.59YY425 pKa = 11.65AGIASILNVYY435 pKa = 8.78AQEE438 pKa = 3.93VTNYY442 pKa = 9.25FDD444 pKa = 3.63QVATKK449 pKa = 10.6VQDD452 pKa = 3.35TSGGVGNSLSDD463 pKa = 3.35QLASYY468 pKa = 7.49FTYY471 pKa = 10.78NPNIAQNQSGALGLLANVTALVSPLLSAQGSNDD504 pKa = 3.31SLTGQIPGIFGFHH517 pKa = 5.56VTTSDD522 pKa = 3.52PLIISDD528 pKa = 4.3LTQNASNAYY537 pKa = 8.15NTGSLQSLDD546 pKa = 3.64NLISVVMSSLQPAIEE561 pKa = 4.02KK562 pKa = 10.55QLFNDD567 pKa = 3.28IRR569 pKa = 11.84TLGINQSGSLSIPSDD584 pKa = 3.92LYY586 pKa = 9.14TAVYY590 pKa = 9.44TLTPGLAQVISYY602 pKa = 10.01FNFSSLLNLPLLNQIYY618 pKa = 10.22LSVVNGIRR626 pKa = 11.84TAIVNDD632 pKa = 4.58AIVGVNAAFKK642 pKa = 10.86NILDD646 pKa = 4.52PKK648 pKa = 10.57DD649 pKa = 4.28NPDD652 pKa = 3.58PDD654 pKa = 3.86YY655 pKa = 11.21STVAGYY661 pKa = 10.78NRR663 pKa = 11.84TSASGAANTVQTTQNTTLLAQSVGYY688 pKa = 9.95SWAQQVVPTILRR700 pKa = 11.84AASADD705 pKa = 3.67ALNKK709 pKa = 8.25ATPQNLNEE717 pKa = 4.41ILNTLLNAGVITSAQVTQLTVAGTQNTSYY746 pKa = 10.07TNYY749 pKa = 10.06VADD752 pKa = 3.58PTGAQNLITSLYY764 pKa = 7.23TAEE767 pKa = 4.1YY768 pKa = 10.35NAVQQAVTDD777 pKa = 4.26FNNGTPKK784 pKa = 10.48GANPTWTDD792 pKa = 3.15PSTVQTDD799 pKa = 3.75GTNSGIEE806 pKa = 3.97TLTDD810 pKa = 3.13YY811 pKa = 11.81GNVYY815 pKa = 10.64DD816 pKa = 4.14YY817 pKa = 11.15LVKK820 pKa = 10.39VRR822 pKa = 11.84HH823 pKa = 6.33DD824 pKa = 3.72AMVDD828 pKa = 3.14ADD830 pKa = 4.11AKK832 pKa = 10.64SHH834 pKa = 5.49SEE836 pKa = 3.78KK837 pKa = 10.48DD838 pKa = 3.48GKK840 pKa = 10.39VAALTSVSGSTNANFNTTAGLTNYY864 pKa = 7.09VTNAVSASGILSSTSDD880 pKa = 3.01ISALAAISQTDD891 pKa = 3.66YY892 pKa = 10.47VSEE895 pKa = 4.37YY896 pKa = 10.1NAEE899 pKa = 3.97AALTNTAFAQGAAAAQVQIRR919 pKa = 11.84LHH921 pKa = 6.3PNGHH925 pKa = 6.54LASPASVDD933 pKa = 3.38YY934 pKa = 10.94NGYY937 pKa = 10.02SGSSDD942 pKa = 2.71KK943 pKa = 10.44TAQYY947 pKa = 11.62AVTTDD952 pKa = 3.42TLQTGQAFTDD962 pKa = 5.04GYY964 pKa = 9.82LASVDD969 pKa = 3.86TVTEE973 pKa = 4.03IAAPSAPTSSWTTAQLTAFNTAIKK997 pKa = 10.49NAFPNATQQSNGNWVIGTDD1016 pKa = 3.92YY1017 pKa = 10.77VAPGATNVLYY1027 pKa = 8.0TAPTTVTGFGSTNQTLTTAGAAGNTSDD1054 pKa = 3.44TVTFTFTAGVNLISNYY1070 pKa = 10.43GIDD1073 pKa = 4.06GASSTGLGQDD1083 pKa = 3.23TSFTPTGTALTIPGLLTGLNGEE1105 pKa = 4.17LQTWHH1110 pKa = 6.57NASKK1114 pKa = 10.69ILFDD1118 pKa = 4.42FNNTTFSTTSNGVTGSSLSIYY1139 pKa = 10.27LLAYY1143 pKa = 8.94YY1144 pKa = 10.02AQLGYY1149 pKa = 9.33ATATDD1154 pKa = 4.1LQTAISNEE1162 pKa = 3.95FASGSDD1168 pKa = 3.2KK1169 pKa = 11.17LALQVLALIQGGLATTSAASSGTVTMNYY1197 pKa = 10.2AFKK1200 pKa = 9.54NTNVNSTVATVGSIVDD1216 pKa = 3.33QRR1218 pKa = 11.84GNKK1221 pKa = 8.45LQPDD1225 pKa = 4.07TTNSLVVGNNLVFQTPTIPTGRR1247 pKa = 11.84TINFDD1252 pKa = 3.04NSYY1255 pKa = 10.85VQMSLDD1261 pKa = 2.97GSEE1264 pKa = 4.05PVKK1267 pKa = 10.41YY1268 pKa = 8.89TLTQLTQILGITLTGNSQADD1288 pKa = 3.66LTSIINAFNEE1298 pKa = 3.92ANGNVTITTGNLLDD1312 pKa = 4.08NLQALTYY1319 pKa = 10.14IQLNPQASTASVSGSQSVTYY1339 pKa = 9.36TGSVPALTTGDD1350 pKa = 3.89YY1351 pKa = 10.35TVTLADD1357 pKa = 3.6GSTYY1361 pKa = 10.16TLQAGDD1367 pKa = 3.44IDD1369 pKa = 4.95IINSSKK1375 pKa = 10.86NAGTYY1380 pKa = 7.73QVEE1383 pKa = 4.36LTAQGLANINAASADD1398 pKa = 3.92HH1399 pKa = 7.3IYY1401 pKa = 10.61TIDD1404 pKa = 3.56NSTLGTLVINKK1415 pKa = 9.51ANATINVDD1423 pKa = 3.66GTQHH1427 pKa = 6.48VYY1429 pKa = 10.01TGDD1432 pKa = 3.67TYY1434 pKa = 11.7NATATATGAVNGEE1447 pKa = 4.18TLNYY1451 pKa = 8.21TVSGSQTEE1459 pKa = 4.37IGSSPVAVNFDD1470 pKa = 3.62PADD1473 pKa = 4.72PINANYY1479 pKa = 10.39NITVTGAAVITVVRR1493 pKa = 11.84NATSDD1498 pKa = 3.81SNSTSASEE1506 pKa = 4.22SMSDD1510 pKa = 3.55LGSVSASDD1518 pKa = 3.37ITSVSQSNSIAGSISISNSNNFSASNSIVEE1548 pKa = 4.45SASTSASKK1556 pKa = 10.58QSSIEE1561 pKa = 4.16TNDD1564 pKa = 3.34KK1565 pKa = 10.75VSEE1568 pKa = 4.08LMSDD1572 pKa = 3.48SASLSEE1578 pKa = 4.06EE1579 pKa = 3.68ASAGGSQSLQNSQSLSNSMSTNGDD1603 pKa = 3.1NSISNVNSLSEE1614 pKa = 4.44SNSLSAQNSLSIAQGNSLNNEE1635 pKa = 3.85LSDD1638 pKa = 4.07AEE1640 pKa = 4.39SGVASGDD1647 pKa = 3.54TSQSNSVNDD1656 pKa = 4.16AGSQSLVNSVSEE1668 pKa = 4.41SNSIIDD1674 pKa = 3.78RR1675 pKa = 11.84GSDD1678 pKa = 3.28GSNDD1682 pKa = 3.91SISNSNSYY1690 pKa = 10.86SVANSNSVQNSISASNSLSLDD1711 pKa = 3.16DD1712 pKa = 4.65SNNVNSDD1719 pKa = 2.94TSEE1722 pKa = 4.19SVSLSISNSQNIVNSVSTSTSGSTSFSMSGNEE1754 pKa = 4.11SVSGSTSISEE1764 pKa = 4.35SEE1766 pKa = 4.29SLSSVDD1772 pKa = 3.63SVSGSVSNSNNVSNTTSASLSLSNSNSEE1800 pKa = 4.19STVEE1804 pKa = 4.09SLSVSNSLSGFAKK1817 pKa = 10.55CC1818 pKa = 5.43

Molecular weight: 185.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G8PE98|G8PE98_PEDCP NADH oxidase OS=Pediococcus claussenii (strain ATCC BAA-344 / DSM 14800 / JCM 18046 / KCTC 3811 / P06) OX=701521 GN=nox PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.69QPKK8 pKa = 8.69KK9 pKa = 7.77RR10 pKa = 11.84HH11 pKa = 4.99RR12 pKa = 11.84QRR14 pKa = 11.84VHH16 pKa = 6.07GFRR19 pKa = 11.84KK20 pKa = 10.03RR21 pKa = 11.84MSTSNGRR28 pKa = 11.84RR29 pKa = 11.84VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84QRR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.8VLSAA44 pKa = 4.11

Molecular weight: 5.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1877

0

1877

566800

21

3609

302.0

33.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.024 ± 0.128

0.379 ± 0.011

5.874 ± 0.069

5.944 ± 0.078

4.496 ± 0.047

6.606 ± 0.055

1.878 ± 0.025

7.832 ± 0.073

6.809 ± 0.07

9.401 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.708 ± 0.032

5.541 ± 0.052

3.314 ± 0.031

4.232 ± 0.046

4.052 ± 0.056

6.698 ± 0.134

5.745 ± 0.063

7.146 ± 0.049

0.978 ± 0.021

3.344 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski