Corynebacterium durum F0235

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium durum

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2823 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L1MGI6|L1MGI6_9CORY Carbamoyl-phosphate synthase large chain OS=Corynebacterium durum F0235 OX=1035195 GN=carB PE=3 SV=1
MM1 pKa = 6.85PTVVSEE7 pKa = 3.98YY8 pKa = 10.95LAILRR13 pKa = 11.84KK14 pKa = 9.97NFNEE18 pKa = 4.05DD19 pKa = 3.18DD20 pKa = 4.06RR21 pKa = 11.84EE22 pKa = 4.37SFAHH26 pKa = 5.31VTGATDD32 pKa = 3.24NDD34 pKa = 3.99LARR37 pKa = 11.84VLVVYY42 pKa = 10.15PDD44 pKa = 3.65TPEE47 pKa = 4.42EE48 pKa = 3.93FQQLLKK54 pKa = 10.78QVDD57 pKa = 4.34GTWGRR62 pKa = 11.84DD63 pKa = 3.56YY64 pKa = 11.53GNHH67 pKa = 5.53EE68 pKa = 4.12VLVYY72 pKa = 9.22MFASDD77 pKa = 4.18LGAEE81 pKa = 4.18EE82 pKa = 5.1TEE84 pKa = 4.39TGDD87 pKa = 3.04YY88 pKa = 10.54DD89 pKa = 3.67YY90 pKa = 10.67PYY92 pKa = 11.05FMNSCEE98 pKa = 4.16QILDD102 pKa = 3.67EE103 pKa = 5.82RR104 pKa = 11.84DD105 pKa = 3.34DD106 pKa = 4.1SSIVDD111 pKa = 3.75MYY113 pKa = 11.46GDD115 pKa = 4.2DD116 pKa = 4.95AIEE119 pKa = 4.75DD120 pKa = 3.77SDD122 pKa = 4.23VDD124 pKa = 3.48VDD126 pKa = 3.85PRR128 pKa = 11.84IDD130 pKa = 3.39PTIPMSQRR138 pKa = 11.84LQFANCMNNGGTSQLYY154 pKa = 10.02IDD156 pKa = 5.16FNPTSRR162 pKa = 11.84GVSGQIICYY171 pKa = 9.97VHH173 pKa = 7.36DD174 pKa = 4.84PDD176 pKa = 3.69AWIVLTPSFSDD187 pKa = 3.82FLQKK191 pKa = 10.73HH192 pKa = 6.13IDD194 pKa = 3.7SSCSFLPYY202 pKa = 10.2NYY204 pKa = 10.23EE205 pKa = 4.13LDD207 pKa = 3.8EE208 pKa = 5.74SDD210 pKa = 3.48

Molecular weight: 23.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L1MD08|L1MD08_9CORY Bacterial transferase hexapeptide repeat protein OS=Corynebacterium durum F0235 OX=1035195 GN=HMPREF9997_02136 PE=4 SV=1
MM1 pKa = 7.63LSLNRR6 pKa = 11.84PSLRR10 pKa = 11.84QLRR13 pKa = 11.84NQQRR17 pKa = 11.84QKK19 pKa = 11.33SLLQHH24 pKa = 6.25RR25 pKa = 11.84RR26 pKa = 11.84SQRR29 pKa = 11.84TILQRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84SLPRR40 pKa = 11.84NHH42 pKa = 7.1RR43 pKa = 11.84LHH45 pKa = 7.22RR46 pKa = 11.84GWQKK50 pKa = 10.75NRR52 pKa = 11.84LLLQRR57 pKa = 11.84RR58 pKa = 11.84LRR60 pKa = 11.84SLRR63 pKa = 11.84MTQQRR68 pKa = 11.84QKK70 pKa = 10.34NRR72 pKa = 11.84QMSHH76 pKa = 6.52LNWW79 pKa = 4.0

Molecular weight: 10.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2823

0

2823

843542

39

4655

298.8

32.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.059 ± 0.067

0.87 ± 0.013

6.156 ± 0.041

5.712 ± 0.045

3.358 ± 0.03

8.053 ± 0.05

2.343 ± 0.027

5.246 ± 0.041

3.201 ± 0.045

9.579 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.339 ± 0.022

3.099 ± 0.032

5.049 ± 0.038

3.443 ± 0.029

6.043 ± 0.042

6.049 ± 0.035

6.336 ± 0.045

8.321 ± 0.045

1.417 ± 0.017

2.328 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski