Bathycoccus sp. RCC1105 virus BpV2

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Algavirales; Phycodnaviridae; Prasinovirus; unclassified Prasinovirus; Bathycoccus sp. RCC1105 virus BpV

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 210 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E5ER03|E5ER03_9PHYC Uncharacterized protein OS=Bathycoccus sp. RCC1105 virus BpV2 OX=880160 GN=BpV2_072c PE=4 SV=1
MM1 pKa = 6.96EE2 pKa = 5.85AEE4 pKa = 4.08VGTPINYY11 pKa = 10.21DD12 pKa = 3.08PDD14 pKa = 3.42EE15 pKa = 5.32FINKK19 pKa = 8.92EE20 pKa = 3.61QDD22 pKa = 3.17QKK24 pKa = 11.56LDD26 pKa = 3.56EE27 pKa = 5.03PEE29 pKa = 4.58PEE31 pKa = 4.31NNEE34 pKa = 3.91HH35 pKa = 6.84YY36 pKa = 10.63YY37 pKa = 10.51FPPPQQYY44 pKa = 9.64YY45 pKa = 9.96EE46 pKa = 5.05PYY48 pKa = 9.07PQQPTQKK55 pKa = 10.42EE56 pKa = 4.31DD57 pKa = 2.74IFTNLDD63 pKa = 2.89KK64 pKa = 10.44TAYY67 pKa = 9.61IIIFVSFILGFFMGKK82 pKa = 7.69TMQPVILRR90 pKa = 11.84PGG92 pKa = 3.13

Molecular weight: 10.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E5ER16|E5ER16_9PHYC Uncharacterized protein OS=Bathycoccus sp. RCC1105 virus BpV2 OX=880160 GN=BpV2_085c PE=4 SV=1
MM1 pKa = 6.78STAAEE6 pKa = 4.31TVTLVARR13 pKa = 11.84EE14 pKa = 4.53LEE16 pKa = 4.44SQSLNAVVAGFSFAAALSWMDD37 pKa = 3.41LVRR40 pKa = 11.84WLVNQVVKK48 pKa = 10.87VNKK51 pKa = 9.79NGGMNYY57 pKa = 9.07TLTALFTTLLSILVYY72 pKa = 10.63VGISRR77 pKa = 11.84VSTRR81 pKa = 11.84VQKK84 pKa = 8.72PTQPIFAVTRR94 pKa = 3.88

Molecular weight: 10.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

210

0

210

57839

65

3675

275.4

31.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.841 ± 0.208

1.452 ± 0.131

6.074 ± 0.175

6.203 ± 0.329

4.226 ± 0.104

6.857 ± 0.505

1.864 ± 0.097

7.016 ± 0.209

7.977 ± 0.454

7.478 ± 0.253

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.593 ± 0.157

6.385 ± 0.307

3.838 ± 0.139

3.041 ± 0.116

4.179 ± 0.227

7.039 ± 0.34

7.331 ± 0.398

6.036 ± 0.145

1.06 ± 0.081

4.511 ± 0.163
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski