Chickpea yellow dwarf virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus

Average proteome isoelectric point is 7.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0A0UF55|A0A0A0UF55_9GEMI Replication-associated protein OS=Chickpea yellow dwarf virus OX=1568974 PE=3 SV=1
MM1 pKa = 7.96PRR3 pKa = 11.84RR4 pKa = 11.84TNNNSFRR11 pKa = 11.84LQTKK15 pKa = 9.03YY16 pKa = 11.1VFLTYY21 pKa = 9.65PHH23 pKa = 6.74SSSTAEE29 pKa = 3.99NLRR32 pKa = 11.84DD33 pKa = 3.88FLWSKK38 pKa = 9.02LTSLAIFFIAIATEE52 pKa = 4.05LHH54 pKa = 6.12QDD56 pKa = 3.96GSPHH60 pKa = 5.94LHH62 pKa = 6.98CLIQLDD68 pKa = 4.15KK69 pKa = 11.07RR70 pKa = 11.84CDD72 pKa = 3.2IRR74 pKa = 11.84DD75 pKa = 3.3PSFFDD80 pKa = 4.7FEE82 pKa = 4.9GNHH85 pKa = 6.78PNIQPAKK92 pKa = 9.43NSKK95 pKa = 9.78QVLEE99 pKa = 4.68YY100 pKa = 10.19ISKK103 pKa = 10.52DD104 pKa = 3.12GNIITRR110 pKa = 11.84GDD112 pKa = 3.55FRR114 pKa = 11.84NHH116 pKa = 5.79RR117 pKa = 11.84VSPTKK122 pKa = 10.37SDD124 pKa = 3.41EE125 pKa = 3.8RR126 pKa = 11.84WRR128 pKa = 11.84TIIQTATSKK137 pKa = 11.14EE138 pKa = 4.22EE139 pKa = 3.73YY140 pKa = 10.77LEE142 pKa = 4.31MIKK145 pKa = 10.12QEE147 pKa = 4.85FPHH150 pKa = 6.17EE151 pKa = 4.21WATKK155 pKa = 8.46LHH157 pKa = 5.33WLEE160 pKa = 4.13YY161 pKa = 9.8SASKK165 pKa = 10.35LFPDD169 pKa = 4.83IEE171 pKa = 4.43PPYY174 pKa = 10.38QSPFPDD180 pKa = 3.39EE181 pKa = 4.76FLHH184 pKa = 5.57CHH186 pKa = 5.47EE187 pKa = 6.07EE188 pKa = 3.66ITEE191 pKa = 3.97WLNRR195 pKa = 11.84DD196 pKa = 3.89LYY198 pKa = 10.6VVSVDD203 pKa = 4.1SYY205 pKa = 11.68QLLHH209 pKa = 6.46PHH211 pKa = 7.01LSLEE215 pKa = 4.38TATEE219 pKa = 3.91DD220 pKa = 5.1LIWMDD225 pKa = 4.75DD226 pKa = 3.6YY227 pKa = 11.67TRR229 pKa = 11.84NPNNSNSGEE238 pKa = 4.14DD239 pKa = 3.66PSTSADD245 pKa = 3.2QVVPEE250 pKa = 4.58RR251 pKa = 11.84PVGPEE256 pKa = 3.28VWEE259 pKa = 4.31DD260 pKa = 3.53TTTSTEE266 pKa = 4.12GSISLHH272 pKa = 4.7TTSTQHH278 pKa = 5.2TTSSTTSPSSSAPTGSSS295 pKa = 2.86

Molecular weight: 33.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A0U8Q7|A0A0A0U8Q7_9GEMI Replication-associated protein OS=Chickpea yellow dwarf virus OX=1568974 PE=3 SV=1
MM1 pKa = 7.93PGPFSGKK8 pKa = 8.25TYY10 pKa = 10.28SRR12 pKa = 11.84KK13 pKa = 8.86KK14 pKa = 10.22GKK16 pKa = 8.59YY17 pKa = 7.81AKK19 pKa = 9.89AYY21 pKa = 8.61KK22 pKa = 10.5ALGVKK27 pKa = 7.95NQKK30 pKa = 8.75EE31 pKa = 4.13LEE33 pKa = 4.19EE34 pKa = 4.38LVNAPACPVTPRR46 pKa = 11.84PALQVAEE53 pKa = 4.51YY54 pKa = 10.17FWTTDD59 pKa = 2.93KK60 pKa = 11.59NGMIFRR66 pKa = 11.84SGGGTAHH73 pKa = 6.29FTMYY77 pKa = 10.3PQGSNEE83 pKa = 3.93NCRR86 pKa = 11.84HH87 pKa = 5.44SNQTNTYY94 pKa = 10.01KK95 pKa = 10.12MAIKK99 pKa = 10.04CWVALDD105 pKa = 3.32PTFYY109 pKa = 11.0KK110 pKa = 10.48KK111 pKa = 10.05VACVPVHH118 pKa = 6.13FWLVYY123 pKa = 10.81DD124 pKa = 4.57KK125 pKa = 11.45DD126 pKa = 4.0PGNTLPGCSTIFDD139 pKa = 4.39TLYY142 pKa = 10.62QDD144 pKa = 5.17YY145 pKa = 9.93PGTWTVSRR153 pKa = 11.84NVSRR157 pKa = 11.84RR158 pKa = 11.84FVVKK162 pKa = 9.84KK163 pKa = 8.83HH164 pKa = 4.1WHH166 pKa = 6.64IILASNGTNPTQDD179 pKa = 3.16QDD181 pKa = 3.62PAKK184 pKa = 9.85YY185 pKa = 9.91AGPGPVFQWKK195 pKa = 9.76HH196 pKa = 3.83MNKK199 pKa = 8.99FFKK202 pKa = 10.59RR203 pKa = 11.84LGVRR207 pKa = 11.84TDD209 pKa = 3.17WKK211 pKa = 10.78NSATGEE217 pKa = 4.17VADD220 pKa = 4.34IKK222 pKa = 11.13SGALYY227 pKa = 9.62LVCAPSGGAVVRR239 pKa = 11.84VGGRR243 pKa = 11.84FRR245 pKa = 11.84MYY247 pKa = 10.18FKK249 pKa = 10.96SVGNQQ254 pKa = 2.8

Molecular weight: 28.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

986

101

336

246.5

28.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.97 ± 0.849

1.724 ± 0.297

5.172 ± 0.654

5.781 ± 1.129

5.274 ± 0.353

5.375 ± 1.321

3.448 ± 0.553

5.172 ± 1.026

6.187 ± 1.015

7.099 ± 0.728

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.42 ± 0.289

5.274 ± 0.211

6.389 ± 0.345

3.753 ± 0.074

5.071 ± 0.358

8.418 ± 1.299

7.708 ± 0.878

5.274 ± 1.286

2.231 ± 0.29

4.26 ± 0.446
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski