Lysobacter maris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3120 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2U9TC59|A0A2U9TC59_9GAMM DUF218 domain-containing protein OS=Lysobacter maris OX=1605891 GN=C9I47_3123 PE=4 SV=1
MM1 pKa = 7.57SSQHH5 pKa = 5.36TAFHH9 pKa = 6.63APGGRR14 pKa = 11.84IQGIRR19 pKa = 11.84EE20 pKa = 3.86TAPAPLAALTAIATMATMLAMGQARR45 pKa = 11.84AGEE48 pKa = 4.18LSGSVSLTSDD58 pKa = 3.38YY59 pKa = 11.02LFRR62 pKa = 11.84GITQTDD68 pKa = 3.82EE69 pKa = 4.27EE70 pKa = 4.71PALQAGVEE78 pKa = 4.19YY79 pKa = 8.9ATDD82 pKa = 3.23SGFYY86 pKa = 10.08AGVWGSSISWLSDD99 pKa = 2.95SDD101 pKa = 4.18PDD103 pKa = 4.07ISSQLEE109 pKa = 3.74LDD111 pKa = 4.08GYY113 pKa = 10.98LGLRR117 pKa = 11.84GEE119 pKa = 4.51FADD122 pKa = 5.7SGVSWDD128 pKa = 3.79VGAIHH133 pKa = 6.21YY134 pKa = 7.53WYY136 pKa = 9.81PGDD139 pKa = 3.8YY140 pKa = 10.42PSGFNSADD148 pKa = 3.33TTEE151 pKa = 4.55VYY153 pKa = 10.66AGLGWSVLSAKK164 pKa = 10.24YY165 pKa = 10.44SYY167 pKa = 11.62ALTDD171 pKa = 3.83LFGIPDD177 pKa = 3.72SDD179 pKa = 3.78GSHH182 pKa = 6.78ALDD185 pKa = 5.49LGASWEE191 pKa = 4.43FVPSWTLDD199 pKa = 3.48AAVGKK204 pKa = 9.84QWVEE208 pKa = 3.79NLDD211 pKa = 4.0GGDD214 pKa = 3.42YY215 pKa = 10.55AYY217 pKa = 9.69WKK219 pKa = 10.28LGVGKK224 pKa = 10.37AFDD227 pKa = 3.74NGIDD231 pKa = 4.28VAVAWNDD238 pKa = 3.02NDD240 pKa = 5.95LIGPDD245 pKa = 3.38EE246 pKa = 4.38TLTVAITKK254 pKa = 10.07SFF256 pKa = 3.29

Molecular weight: 27.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2U9TK15|A0A2U9TK15_9GAMM Short-chain fatty acid transporter OS=Lysobacter maris OX=1605891 GN=C9I47_2654 PE=4 SV=1
MM1 pKa = 7.05ATKK4 pKa = 10.25KK5 pKa = 10.11AAKK8 pKa = 9.45KK9 pKa = 10.34KK10 pKa = 9.45PAAKK14 pKa = 9.97KK15 pKa = 9.35AAKK18 pKa = 9.77KK19 pKa = 9.31VAKK22 pKa = 10.13KK23 pKa = 9.77SAARR27 pKa = 11.84KK28 pKa = 6.29TVKK31 pKa = 10.32KK32 pKa = 10.01AAKK35 pKa = 9.17KK36 pKa = 9.25AAKK39 pKa = 8.65KK40 pKa = 7.86TVRR43 pKa = 11.84KK44 pKa = 9.12AAAKK48 pKa = 8.44KK49 pKa = 7.75TVRR52 pKa = 11.84KK53 pKa = 9.01AAKK56 pKa = 8.7KK57 pKa = 7.36TVKK60 pKa = 10.18KK61 pKa = 10.42AAAKK65 pKa = 8.5KK66 pKa = 7.09TAKK69 pKa = 10.17KK70 pKa = 9.86AAKK73 pKa = 8.57KK74 pKa = 7.22TAKK77 pKa = 9.98KK78 pKa = 9.81AAKK81 pKa = 8.57KK82 pKa = 7.77TVRR85 pKa = 11.84KK86 pKa = 9.23AAAKK90 pKa = 8.48KK91 pKa = 7.19TAKK94 pKa = 10.06KK95 pKa = 9.87AAKK98 pKa = 8.71KK99 pKa = 7.79TVKK102 pKa = 10.16KK103 pKa = 10.12AAKK106 pKa = 8.27KK107 pKa = 7.53TVRR110 pKa = 11.84KK111 pKa = 9.23AAAKK115 pKa = 8.48KK116 pKa = 7.19TAKK119 pKa = 10.06KK120 pKa = 9.87AAKK123 pKa = 8.71KK124 pKa = 7.79TVKK127 pKa = 10.29KK128 pKa = 10.09AAKK131 pKa = 8.25KK132 pKa = 6.92TARR135 pKa = 11.84KK136 pKa = 9.07AATKK140 pKa = 8.86KK141 pKa = 7.88TAKK144 pKa = 9.96KK145 pKa = 9.75AAKK148 pKa = 8.71KK149 pKa = 7.79TVKK152 pKa = 10.16KK153 pKa = 10.18AAKK156 pKa = 8.65KK157 pKa = 7.59TVKK160 pKa = 10.23KK161 pKa = 10.11AAKK164 pKa = 9.75KK165 pKa = 8.7ATKK168 pKa = 10.17KK169 pKa = 9.92SAKK172 pKa = 9.83KK173 pKa = 9.46PARR176 pKa = 11.84KK177 pKa = 6.86TAKK180 pKa = 10.04RR181 pKa = 11.84AAKK184 pKa = 9.59KK185 pKa = 9.68AAPAAMPATPAPMII199 pKa = 4.39

Molecular weight: 20.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3120

0

3120

1080331

31

5326

346.3

37.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.313 ± 0.063

0.821 ± 0.012

6.293 ± 0.038

5.602 ± 0.047

3.287 ± 0.028

8.945 ± 0.041

2.241 ± 0.021

4.035 ± 0.028

2.268 ± 0.038

10.603 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.143 ± 0.022

2.343 ± 0.033

5.44 ± 0.033

3.355 ± 0.026

8.129 ± 0.061

5.141 ± 0.04

4.757 ± 0.084

7.395 ± 0.035

1.537 ± 0.022

2.354 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski