Gleimia hominis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Actinomycetales; Actinomycetaceae; Gleimia

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1778 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2N6UM46|A0A2N6UM46_9ACTO Endopeptidase La OS=Gleimia hominis OX=595468 GN=CJ187_08160 PE=3 SV=1
MM1 pKa = 7.6TYY3 pKa = 10.0IIAQPCVDD11 pKa = 3.72VKK13 pKa = 11.25DD14 pKa = 3.94RR15 pKa = 11.84ACVDD19 pKa = 3.71EE20 pKa = 5.5CPVDD24 pKa = 4.76CIYY27 pKa = 11.04EE28 pKa = 4.42GNRR31 pKa = 11.84SLYY34 pKa = 9.5IHH36 pKa = 7.14PEE38 pKa = 3.78EE39 pKa = 5.19CVDD42 pKa = 4.78CGACEE47 pKa = 3.85PVCPVEE53 pKa = 4.7AIFYY57 pKa = 10.04EE58 pKa = 4.74DD59 pKa = 4.7DD60 pKa = 5.22VPDD63 pKa = 3.5EE64 pKa = 3.82WSDD67 pKa = 3.76YY68 pKa = 10.44YY69 pKa = 10.79RR70 pKa = 11.84ANVDD74 pKa = 3.84FFKK77 pKa = 11.18DD78 pKa = 3.3LGSPGGAMAVGKK90 pKa = 10.2QDD92 pKa = 4.22FDD94 pKa = 4.87DD95 pKa = 4.72EE96 pKa = 4.66MIEE99 pKa = 4.11NLPPQNQDD107 pKa = 2.47

Molecular weight: 12.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2N6UNJ9|A0A2N6UNJ9_9ACTO Amidohydrolase OS=Gleimia hominis OX=595468 GN=CJ187_06315 PE=4 SV=1
MM1 pKa = 7.51TKK3 pKa = 9.09RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SRR15 pKa = 11.84KK16 pKa = 8.57HH17 pKa = 4.77GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILSNRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.83GRR40 pKa = 11.84AKK42 pKa = 10.68LSAA45 pKa = 3.92

Molecular weight: 5.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1778

0

1778

628026

25

2952

353.2

38.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.186 ± 0.073

0.815 ± 0.015

5.656 ± 0.051

5.901 ± 0.057

3.251 ± 0.038

8.097 ± 0.051

2.171 ± 0.023

4.865 ± 0.048

3.758 ± 0.052

9.549 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.283 ± 0.025

2.989 ± 0.032

4.954 ± 0.039

3.985 ± 0.04

6.341 ± 0.059

5.844 ± 0.038

6.078 ± 0.042

8.434 ± 0.046

1.466 ± 0.025

2.376 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski