Salmonella phage 37

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus; Salmonella virus 37

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 105 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0N7CD05|A0A0N7CD05_9CAUD Uncharacterized protein OS=Salmonella phage 37 OX=1654890 GN=SP37_6 PE=4 SV=1
MM1 pKa = 7.66FYY3 pKa = 10.29TVLLNPDD10 pKa = 3.4YY11 pKa = 11.35EE12 pKa = 4.5GATNVKK18 pKa = 8.42TFYY21 pKa = 11.25VEE23 pKa = 3.96GATVEE28 pKa = 4.32DD29 pKa = 4.71AVTAAIDD36 pKa = 4.54DD37 pKa = 4.16INAHH41 pKa = 5.14EE42 pKa = 4.22VEE44 pKa = 4.58IGGEE48 pKa = 3.87PLARR52 pKa = 11.84DD53 pKa = 3.66QFSIIAVFPGYY64 pKa = 9.92QPNVWEE70 pKa = 4.6GG71 pKa = 3.07

Molecular weight: 7.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0N7C9U5|A0A0N7C9U5_9CAUD Uncharacterized protein OS=Salmonella phage 37 OX=1654890 GN=SP37_20 PE=4 SV=1
MM1 pKa = 7.91AEE3 pKa = 4.11PIIRR7 pKa = 11.84EE8 pKa = 4.09SKK10 pKa = 9.83VEE12 pKa = 4.01KK13 pKa = 10.23RR14 pKa = 11.84CCEE17 pKa = 3.92YY18 pKa = 11.12AQGRR22 pKa = 11.84GWWVSKK28 pKa = 8.52FTAPGKK34 pKa = 10.2KK35 pKa = 9.52AVPDD39 pKa = 3.36RR40 pKa = 11.84VLIRR44 pKa = 11.84GGIVLLSNSNARR56 pKa = 11.84RR57 pKa = 11.84RR58 pKa = 11.84TNGAAVSPPP67 pKa = 3.2

Molecular weight: 7.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

105

0

105

18109

37

706

172.5

19.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.691 ± 0.396

1.121 ± 0.098

6.533 ± 0.231

5.92 ± 0.329

3.429 ± 0.146

7.118 ± 0.286

1.712 ± 0.13

5.395 ± 0.157

5.047 ± 0.257

7.322 ± 0.195

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.17 ± 0.112

4.081 ± 0.176

4.721 ± 0.301

3.849 ± 0.299

6.577 ± 0.254

5.743 ± 0.186

6.361 ± 0.278

6.997 ± 0.28

1.751 ± 0.121

3.462 ± 0.158
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski