Aliterella atlantica CENA595

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Cyanobacteria; Chroococcidiopsidales; Chroococcidiopsidaceae; Aliterella; Aliterella atlantica

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4366 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D8ZV76|A0A0D8ZV76_9CYAN Glutamate synthase OS=Aliterella atlantica CENA595 OX=1618023 GN=UH38_05865 PE=3 SV=1
MM1 pKa = 6.99TVNVYY6 pKa = 7.69ATPAYY11 pKa = 9.59IQILLIDD18 pKa = 3.91ILIKK22 pKa = 8.18EE23 pKa = 4.53TKK25 pKa = 10.52VFDD28 pKa = 4.23EE29 pKa = 5.02LDD31 pKa = 3.45SDD33 pKa = 4.94LVPEE37 pKa = 4.72EE38 pKa = 4.77CPSCGSNHH46 pKa = 6.31TYY48 pKa = 10.36FDD50 pKa = 3.56RR51 pKa = 11.84AFNFHH56 pKa = 6.51KK57 pKa = 11.12CEE59 pKa = 4.4DD60 pKa = 4.11CSLMWGFDD68 pKa = 3.69SDD70 pKa = 5.21DD71 pKa = 3.7PDD73 pKa = 3.91YY74 pKa = 11.81DD75 pKa = 3.7EE76 pKa = 6.62DD77 pKa = 5.06LYY79 pKa = 11.6EE80 pKa = 5.75DD81 pKa = 3.61MKK83 pKa = 11.08ADD85 pKa = 4.23QMAEE89 pKa = 3.92NLKK92 pKa = 10.96DD93 pKa = 4.22PIEE96 pKa = 4.47DD97 pKa = 3.59FF98 pKa = 4.34

Molecular weight: 11.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D8ZT21|A0A0D8ZT21_9CYAN Ribosome biogenesis GTPase A OS=Aliterella atlantica CENA595 OX=1618023 GN=UH38_09240 PE=3 SV=1
MM1 pKa = 7.53VVILSCIPLRR11 pKa = 11.84MAIAKK16 pKa = 9.58QIAPAPQAILTLGGDD31 pKa = 3.35IDD33 pKa = 5.19RR34 pKa = 11.84EE35 pKa = 4.0IFTARR40 pKa = 11.84FAQMHH45 pKa = 6.82PSLDD49 pKa = 2.96IWISSGANLEE59 pKa = 3.88ATRR62 pKa = 11.84RR63 pKa = 11.84AFQQIAPTRR72 pKa = 11.84VHH74 pKa = 6.43IDD76 pKa = 2.69RR77 pKa = 11.84RR78 pKa = 11.84AIDD81 pKa = 3.5TVTNFTSLVADD92 pKa = 5.15FKK94 pKa = 9.62QHH96 pKa = 6.18KK97 pKa = 8.4FHH99 pKa = 7.19HH100 pKa = 6.73IYY102 pKa = 10.77VVTADD107 pKa = 3.29YY108 pKa = 11.34HH109 pKa = 4.47MRR111 pKa = 11.84RR112 pKa = 11.84AKK114 pKa = 10.6AIATFVLGSQGIAFTPVAMPTNKK137 pKa = 9.49PVEE140 pKa = 4.48SRR142 pKa = 11.84LHH144 pKa = 6.16LLRR147 pKa = 11.84DD148 pKa = 3.44VCRR151 pKa = 11.84ALLWVLTRR159 pKa = 11.84RR160 pKa = 11.84TGASLHH166 pKa = 6.14PSII169 pKa = 5.69

Molecular weight: 18.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4366

0

4366

1296007

31

2198

296.8

32.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.015 ± 0.043

1.017 ± 0.013

4.94 ± 0.027

5.973 ± 0.039

3.787 ± 0.025

6.632 ± 0.037

1.751 ± 0.016

6.583 ± 0.03

4.565 ± 0.032

10.94 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.867 ± 0.017

4.147 ± 0.027

4.716 ± 0.033

5.493 ± 0.037

5.324 ± 0.028

6.307 ± 0.032

5.589 ± 0.03

6.872 ± 0.027

1.422 ± 0.018

3.058 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski