Gammapapillomavirus 19

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2AM40|A0A2D2AM40_9PAPI Protein E7 OS=Gammapapillomavirus 19 OX=1513264 GN=E7 PE=3 SV=1
MM1 pKa = 7.46IGKK4 pKa = 8.11EE5 pKa = 3.84PCIGDD10 pKa = 3.65VEE12 pKa = 4.86LDD14 pKa = 3.47LSEE17 pKa = 5.81LVIPDD22 pKa = 3.77NLLCEE27 pKa = 4.37EE28 pKa = 4.48SVEE31 pKa = 4.48SLSPDD36 pKa = 3.48CEE38 pKa = 4.31PEE40 pKa = 3.92EE41 pKa = 4.02EE42 pKa = 4.42QARR45 pKa = 11.84STYY48 pKa = 10.59KK49 pKa = 10.41VDD51 pKa = 3.55TACCFCEE58 pKa = 3.76AAVRR62 pKa = 11.84LCVVASVPAIHH73 pKa = 6.96LLEE76 pKa = 4.19EE77 pKa = 4.4LLLGGLLLICPRR89 pKa = 11.84CSRR92 pKa = 11.84GPFQHH97 pKa = 6.55GRR99 pKa = 3.41

Molecular weight: 10.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2AM00|A0A2D2AM00_9PAPI Replication protein E1 OS=Gammapapillomavirus 19 OX=1513264 GN=E1 PE=3 SV=1
MM1 pKa = 7.65MIQIKK6 pKa = 10.42LFLIHH11 pKa = 6.57VGNGYY16 pKa = 10.07IIWTRR21 pKa = 11.84MMYY24 pKa = 10.29GKK26 pKa = 9.57KK27 pKa = 9.9QKK29 pKa = 10.47GLQITMGYY37 pKa = 8.76ILKK40 pKa = 9.75SLMVIGHH47 pKa = 6.92ILQYY51 pKa = 8.83LTQMLSNMDD60 pKa = 3.73YY61 pKa = 10.87QDD63 pKa = 4.15NGQSDD68 pKa = 4.34LKK70 pKa = 10.93ILL72 pKa = 3.82

Molecular weight: 8.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2331

72

599

333.0

37.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.834 ± 0.544

2.274 ± 0.942

6.95 ± 0.615

6.178 ± 0.511

4.848 ± 0.557

5.277 ± 0.554

1.544 ± 0.22

5.706 ± 0.661

5.277 ± 0.836

8.323 ± 0.66

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.973 ± 0.505

4.719 ± 0.594

6.049 ± 0.945

4.59 ± 0.51

5.663 ± 0.707

7.036 ± 0.806

6.092 ± 0.914

6.521 ± 0.398

1.544 ± 0.348

3.604 ± 0.413
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski