Caulobacter virus Rogue

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phicbkvirus

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 331 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K4JNF0|K4JNF0_9CAUD Putative transglutaminase-like cysteine peptidase OS=Caulobacter virus Rogue OX=1211643 GN=CcrRogue_gp044 PE=4 SV=1
MM1 pKa = 7.52PHH3 pKa = 7.29LSKK6 pKa = 10.7QSYY9 pKa = 9.69SFDD12 pKa = 3.7YY13 pKa = 11.0TSDD16 pKa = 3.19ALAAAGEE23 pKa = 4.45FEE25 pKa = 4.45ALTTEE30 pKa = 5.19FYY32 pKa = 10.42RR33 pKa = 11.84YY34 pKa = 5.92EE35 pKa = 3.81TRR37 pKa = 11.84YY38 pKa = 10.58LYY40 pKa = 10.69DD41 pKa = 3.32AARR44 pKa = 11.84AIVGVEE50 pKa = 3.81VRR52 pKa = 11.84VMDD55 pKa = 3.73EE56 pKa = 4.49DD57 pKa = 4.41GFFVGYY63 pKa = 9.65VAGEE67 pKa = 3.86AA68 pKa = 3.67

Molecular weight: 7.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K4JS17|K4JS17_9CAUD Uncharacterized protein OS=Caulobacter virus Rogue OX=1211643 GN=CcrRogue_gp041 PE=4 SV=1
MM1 pKa = 7.64KK2 pKa = 10.25RR3 pKa = 11.84AQCKK7 pKa = 9.98AGRR10 pKa = 11.84LLLGWTQAEE19 pKa = 4.19LADD22 pKa = 3.87AAGCAVSTVADD33 pKa = 3.75YY34 pKa = 11.34EE35 pKa = 4.2RR36 pKa = 11.84GARR39 pKa = 11.84RR40 pKa = 11.84TDD42 pKa = 3.02EE43 pKa = 4.21SIIRR47 pKa = 11.84RR48 pKa = 11.84FVDD51 pKa = 3.16SFSRR55 pKa = 11.84RR56 pKa = 11.84GVRR59 pKa = 11.84FTRR62 pKa = 11.84TSVIHH67 pKa = 6.45PEE69 pKa = 4.6FKK71 pKa = 10.78AA72 pKa = 3.42

Molecular weight: 8.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

331

0

331

65181

27

2805

196.9

21.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.14 ± 0.209

0.936 ± 0.063

6.692 ± 0.195

6.137 ± 0.254

3.756 ± 0.099

8.4 ± 0.635

2.106 ± 0.098

4.692 ± 0.103

4.692 ± 0.193

8.088 ± 0.167

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.396 ± 0.11

2.982 ± 0.115

5.152 ± 0.134

3.248 ± 0.106

6.608 ± 0.273

5.192 ± 0.188

6.157 ± 0.298

6.918 ± 0.117

1.683 ± 0.067

3.027 ± 0.092
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski