Agarivorans albus MKT 106

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Agarivorans; Agarivorans albus

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4397 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R9PPL1|R9PPL1_AGAAL Putrescine utilization regulator OS=Agarivorans albus MKT 106 OX=1331007 GN=AALB_0141 PE=4 SV=1
MM1 pKa = 7.62RR2 pKa = 11.84LSRR5 pKa = 11.84IATAVTLFASVTIAGCGSSNSPFDD29 pKa = 3.98FGNDD33 pKa = 2.97ITPNEE38 pKa = 4.11PNSVKK43 pKa = 10.08IRR45 pKa = 11.84FNPLTGDD52 pKa = 3.06VSTPNNLLFNGSLDD66 pKa = 3.53GTINLPSEE74 pKa = 3.86AAIALTQQYY83 pKa = 10.78QDD85 pKa = 2.99ITNVLGALDD94 pKa = 4.39GWQTSVPFSIPLAYY108 pKa = 10.34GDD110 pKa = 5.64DD111 pKa = 3.43DD112 pKa = 4.8AEE114 pKa = 4.29YY115 pKa = 11.16NEE117 pKa = 5.19EE118 pKa = 4.51IDD120 pKa = 3.87TKK122 pKa = 11.15LDD124 pKa = 3.45ASSFPAGVLLYY135 pKa = 10.11KK136 pKa = 10.47VRR138 pKa = 11.84ASGFADD144 pKa = 3.58TCADD148 pKa = 3.32VTEE151 pKa = 4.67NGGSFVAGQTCRR163 pKa = 11.84VDD165 pKa = 3.25EE166 pKa = 3.96QLVYY170 pKa = 11.08GEE172 pKa = 5.35DD173 pKa = 4.05YY174 pKa = 10.85IATFSDD180 pKa = 3.58GSLIVTPLVPFAPATSYY197 pKa = 10.17MVAITDD203 pKa = 3.82QLLDD207 pKa = 3.6EE208 pKa = 4.95NGRR211 pKa = 11.84GVAAGEE217 pKa = 4.25AYY219 pKa = 10.11QLLSSPITADD229 pKa = 3.9DD230 pKa = 4.27DD231 pKa = 3.98ATVQSLKK238 pKa = 11.07GLTAFNNGLLAAEE251 pKa = 4.33GVTANVSYY259 pKa = 10.89SAVFTTQSVGSVLTTLQQIYY279 pKa = 10.82GGMALNSLLPLSALVDD295 pKa = 3.76TGTTAQDD302 pKa = 3.27VANAALGSSQPGFVAAKK319 pKa = 9.48YY320 pKa = 9.38FKK322 pKa = 9.98STLAVPYY329 pKa = 10.14YY330 pKa = 10.8LSDD333 pKa = 4.29LDD335 pKa = 5.09NPDD338 pKa = 3.1LTGADD343 pKa = 3.54VNKK346 pKa = 9.29WAQAKK351 pKa = 8.61TDD353 pKa = 3.66SPVAILQLLQTNADD367 pKa = 3.74FADD370 pKa = 3.64QGSATSFWAQAGAKK384 pKa = 9.29GFDD387 pKa = 3.18VATFGGLVAGGDD399 pKa = 3.76TTTAGQMLAQADD411 pKa = 4.38LAGLTYY417 pKa = 9.81MQDD420 pKa = 3.49GEE422 pKa = 4.35AMPVDD427 pKa = 3.77SHH429 pKa = 6.79RR430 pKa = 11.84HH431 pKa = 3.64LTAYY435 pKa = 10.72NPVPEE440 pKa = 4.5TKK442 pKa = 9.17STAFLDD448 pKa = 3.61LDD450 pKa = 3.75IYY452 pKa = 11.31LPDD455 pKa = 3.43EE456 pKa = 4.37TLTGNTMPAEE466 pKa = 4.49GWPVVIFQHH475 pKa = 7.08GIGSVKK481 pKa = 8.69EE482 pKa = 3.79TAAAIAASYY491 pKa = 9.21AAQGYY496 pKa = 9.62AVLAMDD502 pKa = 4.93LPYY505 pKa = 10.58HH506 pKa = 6.63GSRR509 pKa = 11.84GLDD512 pKa = 3.12LTGDD516 pKa = 3.88GNAEE520 pKa = 3.54ISANDD525 pKa = 3.81DD526 pKa = 3.42PQVFANLSSFLSIRR540 pKa = 11.84EE541 pKa = 3.88NLRR544 pKa = 11.84QSTADD549 pKa = 3.73LLAVRR554 pKa = 11.84AALQAAGAPAEE565 pKa = 4.01LDD567 pKa = 3.41GSKK570 pKa = 9.84VHH572 pKa = 6.53YY573 pKa = 10.35AGQSLGAIVGVGPASVADD591 pKa = 3.88TVNVSGFDD599 pKa = 3.08IDD601 pKa = 4.63YY602 pKa = 10.56SLQSVSLSAPAGGLAGVFQYY622 pKa = 10.86SPSFGPIVEE631 pKa = 5.23AGLKK635 pKa = 10.37SNPGYY640 pKa = 10.29LALVAAGLGFEE651 pKa = 5.53DD652 pKa = 5.15NDD654 pKa = 3.79TATALEE660 pKa = 4.13QFAVYY665 pKa = 9.75QATYY669 pKa = 10.13PEE671 pKa = 4.37AAQLVIDD678 pKa = 3.99SNYY681 pKa = 9.75PAFASIFGSLAQTVVDD697 pKa = 5.05GVDD700 pKa = 3.97PINYY704 pKa = 8.05AQSGFAMPVLVHH716 pKa = 6.63EE717 pKa = 4.53IVGDD721 pKa = 3.87GSEE724 pKa = 4.29GSGDD728 pKa = 3.51QVIPNSLATLPLVGTEE744 pKa = 4.01PLIASMGLEE753 pKa = 4.09GTEE756 pKa = 3.99VTSAGSYY763 pKa = 10.1AVRR766 pKa = 11.84FSQGSHH772 pKa = 6.06SSLISPAASLAATVEE787 pKa = 4.19MQTQFVSYY795 pKa = 10.24AVSADD800 pKa = 3.21AGNASVVVSDD810 pKa = 4.28SSVIAPAQQ818 pKa = 3.24

Molecular weight: 84.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R9PGZ8|R9PGZ8_AGAAL LemA protein OS=Agarivorans albus MKT 106 OX=1331007 GN=AALB_0697 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.36RR14 pKa = 11.84SHH16 pKa = 6.15GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.5GRR39 pKa = 11.84ASLSAA44 pKa = 3.83

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4397

0

4397

1381857

37

4824

314.3

34.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.308 ± 0.045

1.035 ± 0.015

5.325 ± 0.037

6.11 ± 0.035

4.096 ± 0.025

6.718 ± 0.036

2.181 ± 0.019

5.838 ± 0.028

4.937 ± 0.035

10.914 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.401 ± 0.017

4.292 ± 0.028

3.873 ± 0.021

5.607 ± 0.04

4.275 ± 0.028

7.01 ± 0.039

4.722 ± 0.031

6.905 ± 0.029

1.354 ± 0.018

3.1 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski