Serpentinomonas raichei

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Serpentinomonas

Average proteome isoelectric point is 6.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2363 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A060NT44|A0A060NT44_9BURK Thioredoxin domain-containing protein OS=Serpentinomonas raichei OX=1458425 GN=SRAA_2225 PE=3 SV=1
MM1 pKa = 7.64AATTLIMKK9 pKa = 7.59TFTAIVEE16 pKa = 4.47KK17 pKa = 10.17CTEE20 pKa = 3.73TGLYY24 pKa = 9.0VGYY27 pKa = 10.94VPGFPGAHH35 pKa = 5.05TQGTSLDD42 pKa = 3.82EE43 pKa = 4.23LQQNLQEE50 pKa = 4.33VVSMLLEE57 pKa = 4.91DD58 pKa = 4.57GEE60 pKa = 4.75PVLDD64 pKa = 3.77AQFVGTQQLAIAA76 pKa = 4.89

Molecular weight: 8.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A060NF26|A0A060NF26_9BURK Beta sliding clamp OS=Serpentinomonas raichei OX=1458425 GN=SRAA_0002 PE=3 SV=1
MM1 pKa = 7.46EE2 pKa = 5.58PALNHH7 pKa = 6.89ANLTLSGRR15 pKa = 11.84EE16 pKa = 3.93LARR19 pKa = 11.84MRR21 pKa = 11.84RR22 pKa = 11.84LAMATEE28 pKa = 4.51GKK30 pKa = 10.19VGAANRR36 pKa = 11.84VAAAVRR42 pKa = 11.84ASQAAAQAVQAAARR56 pKa = 11.84RR57 pKa = 11.84DD58 pKa = 3.66EE59 pKa = 4.35AQCGCSGAADD69 pKa = 4.13AACQCDD75 pKa = 3.52VAAAVSAPASQTKK88 pKa = 9.35AACALPNGRR97 pKa = 11.84TLARR101 pKa = 11.84ARR103 pKa = 11.84RR104 pKa = 11.84QTLAQEE110 pKa = 4.53GKK112 pKa = 10.69VGIQKK117 pKa = 9.54VANASRR123 pKa = 11.84IAATMPDD130 pKa = 3.24RR131 pKa = 11.84ADD133 pKa = 3.07WQTALVQGVTGRR145 pKa = 11.84QLAMQKK151 pKa = 10.4RR152 pKa = 11.84IVQSLAGRR160 pKa = 11.84TEE162 pKa = 4.1AQHH165 pKa = 6.45SSGNRR170 pKa = 11.84SVARR174 pKa = 11.84SRR176 pKa = 11.84SRR178 pKa = 11.84PVAEE182 pKa = 3.88RR183 pKa = 11.84TEE185 pKa = 4.21VGHH188 pKa = 5.62TLSGQEE194 pKa = 3.56VSGIQVEE201 pKa = 4.47RR202 pKa = 11.84SSKK205 pKa = 9.22VTGQEE210 pKa = 3.5PGTCRR215 pKa = 11.84NVTGTEE221 pKa = 4.18YY222 pKa = 10.18IGMEE226 pKa = 4.48QYY228 pKa = 10.41QAWCEE233 pKa = 4.31SKK235 pKa = 10.34PQPRR239 pKa = 11.84PPKK242 pKa = 10.14VGLSQTTGQQQSISGTEE259 pKa = 3.77VDD261 pKa = 3.69PQPRR265 pKa = 11.84VTGNQTGVCLGITGTQYY282 pKa = 11.47LSDD285 pKa = 3.79LTTRR289 pKa = 11.84LCQEE293 pKa = 4.0QPLQGPHH300 pKa = 6.33KK301 pKa = 9.57VSVMSSRR308 pKa = 11.84GQQTVTGVVVNGGSKK323 pKa = 8.51VTGNEE328 pKa = 3.52AGMQRR333 pKa = 11.84PITGTQYY340 pKa = 11.52ARR342 pKa = 11.84ALQAAPSRR350 pKa = 11.84MPASEE355 pKa = 4.21ARR357 pKa = 11.84HH358 pKa = 5.71ALPEE362 pKa = 4.01PVQVQRR368 pKa = 11.84QSASWRR374 pKa = 11.84TQSLTGDD381 pKa = 3.43RR382 pKa = 11.84PGIGGGGVTGDD393 pKa = 3.42EE394 pKa = 4.48RR395 pKa = 11.84GACEE399 pKa = 5.31PITGTPFIGPDD410 pKa = 3.27NQYY413 pKa = 10.9AACTIDD419 pKa = 3.95SAWLTRR425 pKa = 11.84HH426 pKa = 6.5PEE428 pKa = 4.07LAVEE432 pKa = 4.72TPPAAPKK439 pKa = 10.2GFSIARR445 pKa = 11.84PQRR448 pKa = 11.84GQPAGRR454 pKa = 11.84ATTPQSAAPRR464 pKa = 11.84NQVTGVAYY472 pKa = 10.33GNSEE476 pKa = 4.9RR477 pKa = 11.84ITGPGFKK484 pKa = 10.19AQGVITGTPEE494 pKa = 3.56FRR496 pKa = 11.84HH497 pKa = 6.23GGQSLDD503 pKa = 3.45SRR505 pKa = 11.84RR506 pKa = 11.84SSARR510 pKa = 11.84PATPASPPAVQPPASEE526 pKa = 4.1RR527 pKa = 11.84LSGEE531 pKa = 3.59GRR533 pKa = 11.84QQGSRR538 pKa = 11.84LTGDD542 pKa = 2.8SWSSSRR548 pKa = 11.84HH549 pKa = 3.99ISGTDD554 pKa = 3.34GVSAQSRR561 pKa = 11.84NPTQRR566 pKa = 11.84GQPRR570 pKa = 11.84AMGMGMDD577 pKa = 3.45ARR579 pKa = 11.84SVRR582 pKa = 11.84EE583 pKa = 3.69QARR586 pKa = 11.84AEE588 pKa = 4.24VPPSPVTGSSGNTGRR603 pKa = 11.84GAMVTISGGARR614 pKa = 11.84GG615 pKa = 3.54

Molecular weight: 64.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2363

0

2363

785481

41

4077

332.4

36.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.42 ± 0.076

1.016 ± 0.019

4.712 ± 0.041

5.363 ± 0.042

3.264 ± 0.028

8.054 ± 0.045

2.563 ± 0.031

3.997 ± 0.042

2.527 ± 0.049

12.183 ± 0.081

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.127 ± 0.025

2.33 ± 0.035

5.715 ± 0.04

5.255 ± 0.049

7.26 ± 0.048

5.025 ± 0.034

4.573 ± 0.044

7.049 ± 0.047

1.586 ± 0.025

1.98 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski