Paenibacillus zeisoli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4013 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A433XIC4|A0A433XIC4_9BACL FtsX-like permease family protein OS=Paenibacillus zeisoli OX=2496267 GN=EJP77_08305 PE=4 SV=1
MM1 pKa = 7.1YY2 pKa = 10.04VVCKK6 pKa = 10.56DD7 pKa = 3.58HH8 pKa = 7.48VEE10 pKa = 3.96LAIDD14 pKa = 3.47MFVDD18 pKa = 3.92EE19 pKa = 6.03FEE21 pKa = 4.76DD22 pKa = 4.47APDD25 pKa = 3.53IVDD28 pKa = 3.83LKK30 pKa = 10.11EE31 pKa = 4.31TEE33 pKa = 4.15FSDD36 pKa = 2.87WDD38 pKa = 3.93PPVKK42 pKa = 10.44CSQCDD47 pKa = 3.3QAAVFLVVV55 pKa = 3.66

Molecular weight: 6.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A433XI74|A0A433XI74_9BACL Uncharacterized protein OS=Paenibacillus zeisoli OX=2496267 GN=EJP77_06455 PE=4 SV=1
MM1 pKa = 7.59KK2 pKa = 8.7PTFKK6 pKa = 10.72PNVSKK11 pKa = 10.78RR12 pKa = 11.84SKK14 pKa = 9.04VHH16 pKa = 5.83GFRR19 pKa = 11.84KK20 pKa = 10.02RR21 pKa = 11.84MSTKK25 pKa = 10.18NGRR28 pKa = 11.84KK29 pKa = 8.87VLAARR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.2GRR39 pKa = 11.84KK40 pKa = 8.79VLSAA44 pKa = 4.05

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4013

0

4013

1259114

11

3386

313.8

34.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.041 ± 0.04

0.707 ± 0.012

5.063 ± 0.03

6.792 ± 0.05

3.955 ± 0.027

7.573 ± 0.04

2.132 ± 0.022

6.866 ± 0.032

5.489 ± 0.04

10.163 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.722 ± 0.02

3.793 ± 0.03

4.017 ± 0.025

3.931 ± 0.025

4.967 ± 0.035

6.613 ± 0.035

5.469 ± 0.042

7.105 ± 0.03

1.179 ± 0.015

3.422 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski