Gordonia phage BaxterFox

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nymbaxtervirinae; Baxtervirus; Gordonia virus BaxterFox

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 86 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A142KCP9|A0A142KCP9_9CAUD Uncharacterized protein OS=Gordonia phage BaxterFox OX=1821549 GN=72 PE=4 SV=1
MM1 pKa = 6.93MACEE5 pKa = 5.33QEE7 pKa = 5.2LCVNWDD13 pKa = 4.23GIGCPCAYY21 pKa = 10.58LDD23 pKa = 3.58TDD25 pKa = 3.39EE26 pKa = 5.74DD27 pKa = 3.94EE28 pKa = 5.25RR29 pKa = 11.84PVVCGYY35 pKa = 10.25CQTLLTVCAEE45 pKa = 4.17RR46 pKa = 11.84LCCPNCTHH54 pKa = 7.93PYY56 pKa = 9.34PGGPNGTGGDD66 pKa = 3.48RR67 pKa = 3.65

Molecular weight: 7.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L7JNR4|A0A1L7JNR4_9CAUD Uncharacterized protein OS=Gordonia phage BaxterFox OX=1821549 GN=86 PE=4 SV=1
MM1 pKa = 7.25PTAKK5 pKa = 9.64QRR7 pKa = 11.84NTTQRR12 pKa = 11.84GLGWSHH18 pKa = 5.24QKK20 pKa = 9.88QRR22 pKa = 11.84VRR24 pKa = 11.84LLGKK28 pKa = 8.53HH29 pKa = 6.03TDD31 pKa = 3.51TTPCWWCGEE40 pKa = 3.85PMYY43 pKa = 10.47RR44 pKa = 11.84DD45 pKa = 3.77PKK47 pKa = 10.58RR48 pKa = 11.84NPDD51 pKa = 3.58YY52 pKa = 11.28DD53 pKa = 3.84PASNDD58 pKa = 3.67PASGALAADD67 pKa = 3.98HH68 pKa = 6.03TRR70 pKa = 11.84SRR72 pKa = 11.84ATGGTVADD80 pKa = 4.41RR81 pKa = 11.84LLHH84 pKa = 5.56GLCNKK89 pKa = 9.44QRR91 pKa = 11.84GDD93 pKa = 3.34GSRR96 pKa = 11.84DD97 pKa = 3.25HH98 pKa = 6.57QRR100 pKa = 11.84PALLKK105 pKa = 10.54RR106 pKa = 11.84RR107 pKa = 11.84GGHH110 pKa = 6.49PANSLNWGG118 pKa = 3.56

Molecular weight: 13.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

86

0

86

17391

41

2139

202.2

22.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.276 ± 0.634

0.845 ± 0.151

7.073 ± 0.386

6.015 ± 0.293

2.565 ± 0.163

8.257 ± 0.349

2.11 ± 0.232

4.445 ± 0.176

3.358 ± 0.19

7.377 ± 0.259

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.076 ± 0.179

3.042 ± 0.204

5.566 ± 0.246

3.6 ± 0.259

7.613 ± 0.433

5.474 ± 0.205

7.09 ± 0.333

7.188 ± 0.239

2.018 ± 0.167

2.013 ± 0.114
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski