Corynebacterium sphenisci DSM 44792

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium sphenisci

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1827 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L7CYY5|A0A1L7CYY5_9CORY ABC transporter OS=Corynebacterium sphenisci DSM 44792 OX=1437874 GN=CSPHI_08825 PE=4 SV=1
MM1 pKa = 7.68NDD3 pKa = 3.31GGFSGDD9 pKa = 3.36ANRR12 pKa = 11.84WGAPGDD18 pKa = 3.76PQGPGPADD26 pKa = 3.66GGAGGPMPEE35 pKa = 4.04QPAWPAEE42 pKa = 4.06NPEE45 pKa = 4.61LTWSADD51 pKa = 3.74PLPPAAPPPAGGHH64 pKa = 6.16PPAGGYY70 pKa = 7.68PPPAGYY76 pKa = 9.39PGAQPAQTAAWSATPHH92 pKa = 6.38AAQLGQQPPPTAMMPPMPAGSTPTGGGAGGGMLPGIAVVAALLLLLGGGGWWWLTQDD149 pKa = 4.77ADD151 pKa = 4.18PAPIAADD158 pKa = 3.27AEE160 pKa = 4.34LAEE163 pKa = 4.72EE164 pKa = 4.9GGFTASAEE172 pKa = 4.07PDD174 pKa = 3.72GEE176 pKa = 4.59DD177 pKa = 3.59GSGAGAEE184 pKa = 4.02AGATGEE190 pKa = 4.41STPPPAPSPTSSRR203 pKa = 11.84STEE206 pKa = 3.73PEE208 pKa = 3.69ARR210 pKa = 11.84SSGCSVDD217 pKa = 4.41ADD219 pKa = 3.56AAVIGRR225 pKa = 11.84AVDD228 pKa = 3.7EE229 pKa = 4.53VNGKK233 pKa = 9.23YY234 pKa = 9.8RR235 pKa = 11.84GRR237 pKa = 11.84WEE239 pKa = 3.74YY240 pKa = 10.75RR241 pKa = 11.84GEE243 pKa = 4.45SNFDD247 pKa = 3.08GCHH250 pKa = 6.11PLTYY254 pKa = 10.45AVLYY258 pKa = 6.57EE259 pKa = 4.16TSGSAGHH266 pKa = 6.34TMLLMFHH273 pKa = 6.63GPDD276 pKa = 3.52YY277 pKa = 11.37LGVDD281 pKa = 3.22SNYY284 pKa = 9.48PQRR287 pKa = 11.84ANSIRR292 pKa = 11.84VTDD295 pKa = 4.14DD296 pKa = 3.22GFIVEE301 pKa = 4.44YY302 pKa = 10.5TDD304 pKa = 5.69LEE306 pKa = 4.77DD307 pKa = 5.07GGDD310 pKa = 3.65SVEE313 pKa = 4.54SVEE316 pKa = 4.14YY317 pKa = 8.99WWDD320 pKa = 3.34GSKK323 pKa = 10.24VAHH326 pKa = 6.77SGRR329 pKa = 11.84IPNTGYY335 pKa = 10.86DD336 pKa = 3.38ALGG339 pKa = 3.48

Molecular weight: 34.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L7CVH4|A0A1L7CVH4_9CORY Beta-lactamase OS=Corynebacterium sphenisci DSM 44792 OX=1437874 GN=CSPHI_00795 PE=4 SV=1
MM1 pKa = 7.11NAVAAVWRR9 pKa = 11.84RR10 pKa = 11.84DD11 pKa = 3.36VLRR14 pKa = 11.84TLRR17 pKa = 11.84NKK19 pKa = 10.67AVMVSALLIPGLFLLAFHH37 pKa = 7.15AAFSRR42 pKa = 11.84SAADD46 pKa = 4.24LGIDD50 pKa = 3.56YY51 pKa = 10.9ADD53 pKa = 3.8YY54 pKa = 11.3LLPTAMMQAIIFTAGGSALAVARR77 pKa = 11.84DD78 pKa = 3.89AEE80 pKa = 4.34EE81 pKa = 5.45GIHH84 pKa = 6.33SRR86 pKa = 11.84LRR88 pKa = 11.84TMPAPMWAVAAGRR101 pKa = 11.84VLADD105 pKa = 4.0LTRR108 pKa = 11.84MAWSGGIVLALSLALGARR126 pKa = 11.84IRR128 pKa = 11.84GGIGGILVMLLIFALVTAIIAAGVDD153 pKa = 4.11GLCLLSAKK161 pKa = 9.81PVSTALLFQSLTIIILMFSTAFVPAEE187 pKa = 4.11ALPDD191 pKa = 3.56ALAPVIRR198 pKa = 11.84HH199 pKa = 5.25VPVSPILEE207 pKa = 4.4TIRR210 pKa = 11.84ARR212 pKa = 11.84MAGDD216 pKa = 3.28PAGAAGVEE224 pKa = 3.95AAAWLVALAGAAGWGFVHH242 pKa = 7.09ALSRR246 pKa = 11.84RR247 pKa = 11.84SHH249 pKa = 5.92AA250 pKa = 4.17

Molecular weight: 25.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1827

0

1827

605766

40

3043

331.6

35.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.97 ± 0.122

0.725 ± 0.014

6.172 ± 0.054

6.113 ± 0.065

2.667 ± 0.035

10.081 ± 0.055

2.028 ± 0.025

3.937 ± 0.036

1.734 ± 0.047

9.979 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.988 ± 0.023

1.699 ± 0.028

6.031 ± 0.054

2.086 ± 0.027

8.268 ± 0.058

3.889 ± 0.037

5.125 ± 0.033

8.336 ± 0.048

1.369 ± 0.025

1.803 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski