Bhendi yellow vein mosaic virus [2005:Thadagan:India]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Bhendi yellow vein mosaic virus

Average proteome isoelectric point is 7.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C3TU33|C3TU33_9GEMI AC4 OS=Bhendi yellow vein mosaic virus [2005:Thadagan:India] OX=611724 GN=AC4 PE=3 SV=1
MM1 pKa = 7.23PPKK4 pKa = 10.39RR5 pKa = 11.84FVINSKK11 pKa = 10.8NYY13 pKa = 8.9FLTYY17 pKa = 8.65PQCSLNKK24 pKa = 10.23EE25 pKa = 4.04EE26 pKa = 6.15ALSQLQNIQTPTNKK40 pKa = 10.0KK41 pKa = 8.87YY42 pKa = 10.85IKK44 pKa = 9.66ICRR47 pKa = 11.84EE48 pKa = 3.53LHH50 pKa = 6.26EE51 pKa = 4.93NGEE54 pKa = 4.28PHH56 pKa = 6.66LHH58 pKa = 6.03VLIQFEE64 pKa = 4.78GKK66 pKa = 9.95YY67 pKa = 9.77KK68 pKa = 10.46CQNQRR73 pKa = 11.84FFDD76 pKa = 4.08LVATNRR82 pKa = 11.84SAHH85 pKa = 5.42FHH87 pKa = 6.51PNIQGAEE94 pKa = 3.99SSSDD98 pKa = 3.15VKK100 pKa = 11.29SYY102 pKa = 10.79IDD104 pKa = 3.7KK105 pKa = 11.33DD106 pKa = 3.49GDD108 pKa = 3.67TLEE111 pKa = 4.22WGGFQIDD118 pKa = 3.41GRR120 pKa = 11.84SARR123 pKa = 11.84GGQQSANDD131 pKa = 3.81AYY133 pKa = 10.7AAALNTGSKK142 pKa = 10.8AEE144 pKa = 3.9ALRR147 pKa = 11.84VIKK150 pKa = 10.26EE151 pKa = 3.65IAPTDD156 pKa = 3.95FQPQFHH162 pKa = 7.33DD163 pKa = 4.39LDD165 pKa = 5.13PNLHH169 pKa = 7.0RR170 pKa = 11.84YY171 pKa = 7.4FQEE174 pKa = 4.22PPAPYY179 pKa = 8.43VTPFSSSSFDD189 pKa = 3.41QVPEE193 pKa = 3.95EE194 pKa = 4.16LEE196 pKa = 3.67EE197 pKa = 4.08WACKK201 pKa = 10.63NFVNAAARR209 pKa = 11.84PLRR212 pKa = 11.84PQSIAIEE219 pKa = 4.11VDD221 pKa = 2.9TRR223 pKa = 11.84TGKK226 pKa = 8.61TMWARR231 pKa = 11.84SLGPHH236 pKa = 6.71NYY238 pKa = 10.18LCGHH242 pKa = 7.38LDD244 pKa = 4.18LSPKK248 pKa = 10.15VYY250 pKa = 11.09SNDD253 pKa = 2.39AWFNIIDD260 pKa = 4.53DD261 pKa = 4.12VDD263 pKa = 3.5PHH265 pKa = 5.85YY266 pKa = 11.0LKK268 pKa = 10.7HH269 pKa = 6.2FKK271 pKa = 10.7EE272 pKa = 4.46FMGAQRR278 pKa = 11.84DD279 pKa = 3.81WQSNTKK285 pKa = 9.6YY286 pKa = 10.57GKK288 pKa = 9.12PVQIKK293 pKa = 10.41GGIPTIFLCNPGPNASYY310 pKa = 11.17KK311 pKa = 10.64EE312 pKa = 3.98FLDD315 pKa = 3.76EE316 pKa = 4.66EE317 pKa = 4.6KK318 pKa = 11.17NSALKK323 pKa = 10.45AWALKK328 pKa = 9.77NAAFVFLTEE337 pKa = 4.27PLYY340 pKa = 11.31SGTNQSTAQGSEE352 pKa = 3.87EE353 pKa = 3.99THH355 pKa = 5.98QEE357 pKa = 3.91EE358 pKa = 4.9EE359 pKa = 4.36SRR361 pKa = 11.84SS362 pKa = 3.67

Molecular weight: 41.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C3TU29|C3TU29_9GEMI AC5 OS=Bhendi yellow vein mosaic virus [2005:Thadagan:India] OX=611724 GN=AC5 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 10.21RR4 pKa = 11.84AADD7 pKa = 3.55IVISTPASKK16 pKa = 10.29VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFGSPYY27 pKa = 8.67TSRR30 pKa = 11.84AAAPIVRR37 pKa = 11.84VTKK40 pKa = 9.91QQAWTNRR47 pKa = 11.84PMNRR51 pKa = 11.84KK52 pKa = 7.8PRR54 pKa = 11.84MYY56 pKa = 10.68RR57 pKa = 11.84MYY59 pKa = 10.44RR60 pKa = 11.84SPDD63 pKa = 3.21VPRR66 pKa = 11.84GCEE69 pKa = 4.34GPCKK73 pKa = 10.01VQSFEE78 pKa = 4.02SRR80 pKa = 11.84HH81 pKa = 5.54DD82 pKa = 3.51VVHH85 pKa = 6.75IGKK88 pKa = 9.41VMCISDD94 pKa = 3.53VTRR97 pKa = 11.84GVGLTHH103 pKa = 7.8RR104 pKa = 11.84IGKK107 pKa = 8.54RR108 pKa = 11.84FCVKK112 pKa = 9.96SVYY115 pKa = 10.52VLGKK119 pKa = 9.83IWMDD123 pKa = 3.42EE124 pKa = 3.91NNKK127 pKa = 8.38TKK129 pKa = 10.84NHH131 pKa = 5.96TNSVMFFLVRR141 pKa = 11.84DD142 pKa = 3.83RR143 pKa = 11.84RR144 pKa = 11.84PTDD147 pKa = 3.06KK148 pKa = 10.78PQDD151 pKa = 3.59FGEE154 pKa = 4.33VFNMFDD160 pKa = 4.29NEE162 pKa = 4.11PSTATVKK169 pKa = 10.61NMHH172 pKa = 7.0RR173 pKa = 11.84DD174 pKa = 3.31RR175 pKa = 11.84YY176 pKa = 8.78QVLRR180 pKa = 11.84KK181 pKa = 8.43WHH183 pKa = 5.58ATVTGGQYY191 pKa = 10.85ASKK194 pKa = 10.24EE195 pKa = 3.73QALVKK200 pKa = 10.68KK201 pKa = 9.39FVRR204 pKa = 11.84VNNYY208 pKa = 7.82VVYY211 pKa = 9.96NQQEE215 pKa = 3.8AGKK218 pKa = 10.1YY219 pKa = 8.23EE220 pKa = 4.02NHH222 pKa = 6.47TEE224 pKa = 3.99NALMLYY230 pKa = 7.52MACTHH235 pKa = 7.06ASNPVYY241 pKa = 9.86ATLKK245 pKa = 9.47IRR247 pKa = 11.84IYY249 pKa = 10.64FYY251 pKa = 11.34DD252 pKa = 3.32SVTNN256 pKa = 3.98

Molecular weight: 29.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1241

100

362

177.3

20.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.754 ± 1.198

2.417 ± 0.524

4.271 ± 0.618

4.754 ± 1.165

4.432 ± 0.468

4.593 ± 0.312

4.11 ± 0.641

5.157 ± 1.128

5.721 ± 0.637

7.977 ± 1.454

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.498 ± 0.656

6.285 ± 0.58

5.882 ± 0.513

5.318 ± 0.822

7.01 ± 1.018

7.655 ± 1.47

6.124 ± 0.713

5.963 ± 1.441

1.289 ± 0.115

3.787 ± 0.646
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski