Planococcus salinus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planococcus

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3216 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3M8P7P5|A0A3M8P7P5_9BACL Class I SAM-dependent methyltransferase OS=Planococcus salinus OX=1848460 GN=EEX84_07040 PE=4 SV=1
MM1 pKa = 7.47KK2 pKa = 10.51NSFKK6 pKa = 11.13VIVLFLCSILILSGCAGFQTSNSDD30 pKa = 3.34EE31 pKa = 4.44GNTNEE36 pKa = 4.98DD37 pKa = 3.19GKK39 pKa = 9.15TVVDD43 pKa = 6.07FWSFWGSEE51 pKa = 3.89LRR53 pKa = 11.84RR54 pKa = 11.84PIIDD58 pKa = 4.66KK59 pKa = 10.64IVADD63 pKa = 5.32FNASQDD69 pKa = 3.87EE70 pKa = 4.5IEE72 pKa = 4.52VKK74 pKa = 8.92HH75 pKa = 6.1TYY77 pKa = 10.39SPWGDD82 pKa = 2.39IWTKK86 pKa = 10.4EE87 pKa = 3.83LAAIAAGNPPDD98 pKa = 5.08VVINDD103 pKa = 3.42INATAIRR110 pKa = 11.84GQEE113 pKa = 3.85NQAMNLSEE121 pKa = 5.21FYY123 pKa = 10.78DD124 pKa = 3.73DD125 pKa = 4.56SFSEE129 pKa = 4.15KK130 pKa = 10.25FYY132 pKa = 10.82PEE134 pKa = 3.91LWNATLYY141 pKa = 10.99EE142 pKa = 4.5GDD144 pKa = 3.69SYY146 pKa = 11.53GIPFNTDD153 pKa = 2.29TRR155 pKa = 11.84VLYY158 pKa = 10.02YY159 pKa = 10.9NKK161 pKa = 10.36DD162 pKa = 3.08AFEE165 pKa = 4.24EE166 pKa = 4.32VGLDD170 pKa = 3.62PEE172 pKa = 5.19DD173 pKa = 4.58PPEE176 pKa = 3.91TWEE179 pKa = 4.01EE180 pKa = 4.13LEE182 pKa = 4.39EE183 pKa = 4.07YY184 pKa = 10.1AAKK187 pKa = 10.6LDD189 pKa = 3.83VKK191 pKa = 10.89NGEE194 pKa = 4.17SYY196 pKa = 11.31DD197 pKa = 3.68RR198 pKa = 11.84LGFYY202 pKa = 9.8PLWGVGYY209 pKa = 9.73DD210 pKa = 3.47VWLLNANGEE219 pKa = 4.42NYY221 pKa = 10.22FGADD225 pKa = 3.34NNVDD229 pKa = 3.65TVNVNTEE236 pKa = 4.13TNVEE240 pKa = 4.0VLNWLKK246 pKa = 10.49SWRR249 pKa = 11.84DD250 pKa = 3.51RR251 pKa = 11.84IGEE254 pKa = 4.17DD255 pKa = 3.93VVNSYY260 pKa = 9.05QAQIDD265 pKa = 4.15SQQGNPFFSGDD276 pKa = 3.37LAMLVQQPTFYY287 pKa = 10.45TQIRR291 pKa = 11.84DD292 pKa = 3.57YY293 pKa = 11.8AEE295 pKa = 4.28DD296 pKa = 4.04LNFGVAQLPEE306 pKa = 4.17YY307 pKa = 10.58EE308 pKa = 4.82PGNGHH313 pKa = 5.81TSWGGGFVAEE323 pKa = 4.38IPEE326 pKa = 4.59GSSDD330 pKa = 5.05PEE332 pKa = 3.9AAWAFIEE339 pKa = 4.48YY340 pKa = 8.7LTGPEE345 pKa = 3.93AQEE348 pKa = 3.67YY349 pKa = 8.05WAVQNFDD356 pKa = 3.02NVANIEE362 pKa = 4.05AAEE365 pKa = 4.11AAAQSDD371 pKa = 4.21EE372 pKa = 4.17FTEE375 pKa = 4.46EE376 pKa = 3.91GQMVYY381 pKa = 10.43QMAVDD386 pKa = 3.64SMEE389 pKa = 4.18NTLLTPAPVEE399 pKa = 3.86APGFYY404 pKa = 10.6NYY406 pKa = 9.96INPKK410 pKa = 9.44VDD412 pKa = 3.32EE413 pKa = 4.77FFLGSLTAEE422 pKa = 4.11EE423 pKa = 4.97ALAQAQADD431 pKa = 3.92VEE433 pKa = 4.46ALIEE437 pKa = 4.49SNQQ440 pKa = 3.22

Molecular weight: 49.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3M8P8K1|A0A3M8P8K1_9BACL DNA replication and repair protein RecF OS=Planococcus salinus OX=1848460 GN=recF PE=3 SV=1
MM1 pKa = 7.67SLRR4 pKa = 11.84TYY6 pKa = 10.39QPNTRR11 pKa = 11.84KK12 pKa = 9.66HH13 pKa = 5.87SKK15 pKa = 8.83VHH17 pKa = 5.7GFRR20 pKa = 11.84ARR22 pKa = 11.84MSTKK26 pKa = 9.71NGRR29 pKa = 11.84RR30 pKa = 11.84VIAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 8.8GRR40 pKa = 11.84KK41 pKa = 8.75VLSAA45 pKa = 4.05

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3216

0

3216

962098

37

1528

299.2

33.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.111 ± 0.045

0.584 ± 0.013

5.204 ± 0.037

7.989 ± 0.057

4.523 ± 0.035

7.247 ± 0.037

2.042 ± 0.022

7.054 ± 0.044

5.944 ± 0.046

9.717 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.917 ± 0.021

3.777 ± 0.026

3.828 ± 0.026

3.765 ± 0.029

4.312 ± 0.031

5.901 ± 0.028

5.508 ± 0.026

7.327 ± 0.029

1.023 ± 0.017

3.227 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski